Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328E02f
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   198   1e-51
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    33   0.11 
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  198 bits (484), Expect = 1e-51
 Identities = 99/133 (74%), Positives = 110/133 (82%)
 Frame = -3

Query: 476 IYPAGDPL*LNFPYXWTPNIXGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKL 297
           IYPA DPL  +      PN+ G  HY++ARGVQKILQDYKSLQDIIAILGMDELSEEDKL
Sbjct: 403 IYPAVDPLD-STSRIMDPNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKL 461

Query: 296 TVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGP 117
           TV+RARKIQRFLSQPFQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM G 
Sbjct: 462 TVSRARKIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGG 521

Query: 116 IEEVVAKADTLAK 78
           I++V  KA+ LAK
Sbjct: 522 IDDVFKKAEELAK 534


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = -3

Query: 380 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL 201
           ++ILQ+ + L +I+ ++G   L+E DK+T+    ++ + +   F     +T +  +  P 
Sbjct: 469 KEILQEEEDLSEIVQLVGKASLAESDKVTL----EVAKIIKDDFLQQNGYTKY-DRFCPF 523

Query: 200 EETIKGFSKILAGDYD 153
            +T+ G  K + G YD
Sbjct: 524 YKTV-GMLKNMIGFYD 538


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 378 ENSSGLQIPAGHYCYFG 328
           ENS+G +  AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440


>Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical
           protein C41C4.3 protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 233 FTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAF 132
           F   + KL+ L       S I AG +DH  E+ F
Sbjct: 361 FLSKSSKLISLTLQCNSISSIAAGAFDHFTELQF 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,546
Number of Sequences: 27780
Number of extensions: 225924
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)