Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    29   0.32 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    29   0.32 
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    29   0.42 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   3.0  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   6.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   9.0  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   9.0  

>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 15  LRYAAGLRRAVTRHVWRDHRRYACVWCSVYT 107
           +RY A LRR V +   + H RY C +C   T
Sbjct: 16  VRYGASLRRDVRKIEVQQHSRYQCPFCGRLT 46


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 304 NSSVGLNGSGSRSILGPDGSCKLTTFITLIG*ADPE 197
           N +VGL+ S   +ILGP+G+ K T    LIG   P+
Sbjct: 711 NVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQ 746


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal
          protein L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 15 LRYAAGLRRAVTRHVWRDHRRYACVWC 95
          +RY A LRR V +   + H RY C +C
Sbjct: 16 VRYGASLRRDVRKIEVQQHSRYQCPFC 42


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 119 STEFSVHRAPDTRVTAMIPPNVSCYGTP 36
           S+ ++ HR+ D++  + +PPNV    +P
Sbjct: 122 SSNYAHHRSADSQTKSALPPNVPASSSP 149


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 128 TKVSTEFSVHRAPDTRVTAMIPP 60
           +  STE S H    T +T+++PP
Sbjct: 50  SSASTETSTHSVTSTNITSIVPP 72


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 70   IAVTRVSGALCT-LNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLSR 216
            + +T +S    T  +SVLT V +++V  ++  L +  + T  P P+ L R
Sbjct: 951  VFLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKR 1000


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 107 SVHRAPDTRVTAMIPPNVSCYGTP*TSSVSEGTN 6
           ++H  P ++  ++IPPN S  G+   S   +  N
Sbjct: 327 TIHYTPSSKRISVIPPNTSNIGSRVVSRSGQNNN 360


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 325 GRHRLLHRLVTPRRNCQPVFRQNQDYGPE 411
           G H + + L T +R C+ ++ QN D   E
Sbjct: 36  GTHSVKNALATRKRECRALYVQNADIHSE 64


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 267 PYWAQTAVVSLQLSLR*SAKLIRNW 193
           P WA  A++   LS+  S+ L+R W
Sbjct: 828 PMWASAAMMFSSLSVLASSLLLRRW 852


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 322 PGRHRLLHRLVTPRRNCQPVFR-QNQDY 402
           PG    LH ++TPR   +  +R  N DY
Sbjct: 435 PGSFEALHNIITPRSITEFSYRYDNDDY 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,178
Number of Sequences: 5004
Number of extensions: 37580
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)