Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0616 + 25546175-25546359,25546778-25546837,25546939-255469...    30   1.3  
11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426     28   4.0  
08_02_0724 + 20439312-20439523,20441282-20441345                       28   4.0  
05_06_0032 - 25067996-25068156,25068746-25068815,25069385-250695...    28   4.0  
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482...    27   6.9  

>11_06_0616 +
           25546175-25546359,25546778-25546837,25546939-25546957,
           25547948-25547998,25548097-25548230,25548558-25548948,
           25549840-25549890
          Length = 296

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 351 GDTKAQLPAGLPPEPRLWTREDVSCISEXGVKKIPTY 461
           G  +AQ P  LP +P L  + D+ C +   ++  P Y
Sbjct: 130 GGAEAQQPMMLPEDPSLLHQRDIGCSASTSLQSYPGY 166


>11_06_0163 + 20821109-20821250,20827123-20827415,20828279-20830426
          Length = 860

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +2

Query: 254 WAQYGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTMDQRGCFLY 427
           W +       +QS  TI+ + + L A  +F  + + G   +R S   + M + G  LY
Sbjct: 681 WPEMKTVAELVQSCATIIWIASALHAAVNFGQYMYAGYVPNRPSVSRRPMPKPGTDLY 738


>08_02_0724 + 20439312-20439523,20441282-20441345
          Length = 91

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 263 YGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTMD 406
           Y   +A  +SN T + LPT    ++S T W  +   ASR +A  K  D
Sbjct: 14  YSTTSAVRRSNPTEVHLPTRSKPSSSSTTWSIEIIQASRYAAYQKMSD 61


>05_06_0032 -
           25067996-25068156,25068746-25068815,25069385-25069532,
           25069611-25069726,25069799-25069877,25069960-25070030,
           25070139-25070348,25070445-25070453,25070824-25070968,
           25071297-25071332,25071428-25071494,25071591-25071624
          Length = 381

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 366 QLPAGLPPEPRLWTREDVSCISEXGVKKIPTYLIXDM 476
           Q+  GLP  P+  T   V C    G+K  PT+L+  +
Sbjct: 221 QMEQGLPLVPKSLTFNRVKCAVSKGMKLGPTFLVTSL 257


>03_01_0658 +
           4818401-4818540,4818605-4819201,4819694-4819949,
           4820038-4820723,4821009-4821147,4821378-4821514,
           4821805-4822077,4822175-4822382,4822660-4822731,
           4823230-4823460,4824269-4824532,4825127-4825268,
           4825355-4825467
          Length = 1085

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 91  GALCTLNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLSRL 219
           GA C  NS+L  + +   + +  F     IL   PV DQL+RL
Sbjct: 133 GATCYANSILQCLYMNTSFRLGIFSLEPDILKMHPVLDQLARL 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,070
Number of Sequences: 37544
Number of extensions: 261811
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)