Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    27   6.2  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      27   8.1  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 97  LCTLNSVLTFVMIMYVY*VVQFLFST 174
           +C+LN+ +TF++I+Y+   + F F T
Sbjct: 1   MCSLNNQVTFILIIYIQ--ISFTFGT 24


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 27  AGLRRAVTRHVWRDHRRYAC 86
           AGLR A  +HVW    +Y C
Sbjct: 277 AGLREAGEKHVWPTRNQYGC 296


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 239 LTTAVWAQYGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTMDQR 412
           LTT         T T+Q++ T+   P+   AT + T       TA+ SS+ T    Q+
Sbjct: 366 LTTTTEVISDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQK 423


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 78  YACVWCSVYTEFCANFCDDNVRVLSCPVSVFNKDFDNATS 197
           YA V+C      CA+FC+D+ + ++C      KD D+  S
Sbjct: 37  YAMVYCRKTCGNCADFCEDS-KFITCSAE-RKKDCDDMLS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,467,938
Number of Sequences: 27780
Number of extensions: 218714
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)