Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.7  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.7  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 61   GGIIAVTRVSGALCTLNSVLTFVMIMYVY*VVQFLF 168
            GG+I    VS  L  + + L+ V+++ V  V+ F+F
Sbjct: 983  GGVIESIMVSDYLPLVAATLSGVLVLLVIIVLAFVF 1018


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 LSCPVSVFNKDFDNATSSGSA*PINVMKVVSLQL 248
           +SC +S+F ++FD    +     +   K + L+L
Sbjct: 67  ISCLLSIFKQEFDETERASGDLSLG-QKTIDLEL 99


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 381 LPPEPRLWTREDVSCISEXGVKKI 452
           LPP P     ED+S   E G++++
Sbjct: 441 LPPLPLHTECEDLSVSGEAGIEEV 464


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 381 LPPEPRLWTREDVSCISEXGVKKI 452
           LPP P     ED+S   E G++++
Sbjct: 441 LPPLPLHTECEDLSVSGEAGIEEV 464


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 266 GAATATIQSNRTIMALPTTLGATASFTAW 352
           G+ T    S+ +   +PT + AT   T W
Sbjct: 177 GSNTIERNSHESXFVVPTRVPATCCTTXW 205


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 147 LSCPVSVFNKDFDNATSSGSA*PINVMKVVSLQL 248
           +SC +S+F ++FD    +     +   K + L+L
Sbjct: 35  ISCLLSIFKQEFDETERASGDLSLG-QKTIDLEL 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,264
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)