Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.32
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 0.97
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 1.7
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 3.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 5.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 5.2
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 5.2
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.2
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 6.8
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 25 6.8
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 25 9.0
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 25 9.0
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 9.0
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 9.0
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.32
Identities = 25/108 (23%), Positives = 47/108 (43%)
Frame = +1
Query: 73 SPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTSWW 252
S +P R +S + +TS+ + P+ +SS S + S+S K + +S
Sbjct: 128 SSTSIAPSMIGTRTSSS--YFITSSSS-TPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSS 184
Query: 253 KASTKRRKTSTGIFQGSSSDVTRCLKAPAPETVESRLSSDGVLTITAP 396
+ + +S+ SSS ++ +P+ S+ SS +T T P
Sbjct: 185 SSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTP 232
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 292 FQGSSSDVTRCLKAP-APETVESRLSSDGVLTITAPRKVPDAVK 420
F+ ++ T L AP PE ++ LSS V TI ++PD +K
Sbjct: 270 FKAETNAATISLFAPKTPEKLQITLSSSDVFTIIHLLQIPDNIK 313
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 304 SSDVTRCLKAPAPETVESRLSSDGVLTITAPRK--VPDAVKGERXVPIAQTGS 456
S V + P + +S L + +T+T +K +P A+KG + A+TGS
Sbjct: 35 SETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGS 87
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 75 ACPVLSEDYFRPWRQLAAAS 134
+CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 81 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 188
P SED P + L A ++ +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 480 GPLISLRTGPGLCDGHXSLSLDGVGYLP 397
G + LR+G C H + SL G+GYLP
Sbjct: 1047 GEYVHLRSGMP-CHLHVTSSLYGLGYLP 1073
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 292 FQGSSSDVTRCLKAPAPETVESRLSSDGVLTITAPRKVPDAVKGERXVPIAQTGSRSQGD 471
FQGSS+ + L + +T L+S+ V +P PD + A + SRS+ D
Sbjct: 323 FQGSSAVLKEGLNSTVKKTFFDNLNSEKVCPSVSPFLTPDNIASSILYSTA-SFSRSKPD 381
Query: 472 Q 474
+
Sbjct: 382 R 382
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 76 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 186
PVQ SP TSD+ D +L+ + P S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -3
Query: 342 RRRRLQAARNVGRTALKYTRARLSSLRACLPPRCTRRQSSPKSLPARSAARPD*LGTCP 166
R+R A V A YT SSL + P TR P SLP+ + +G CP
Sbjct: 653 RKRNSFNAPTVFSLAEDYTSFYPSSLPSLFPDLVTRCIQKPYSLPSME-GKEYLVGLCP 710
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 452 PVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGA 336
P + FL+P+T SGTF + P S R +T S A
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSA 423
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 51 PNDMLAAVACPVLSEDYFRP 110
PND LA ++C L DY P
Sbjct: 56 PNDELAPLSCEGLGPDYENP 75
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 PRTTCWLPSPVQCSPKTTSDRGDNSRLHLVTS-APA*RPTRTSSKSI 186
PR T P P+ K TSD + S ++V P T+ S++S+
Sbjct: 409 PRLTSKQPIPMASPAKLTSDTSNKSSAYVVVDHHPIISSTQLSNESL 455
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 84 VLSEDYFRPWRQLAAASRDLGSSIKADKDKFQV 182
+L+ Y + W+QL++ + + S +DKD Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 470 SPCERDPVCAMGTFLSPLTASGTFLGAVMVRTPSDDSRDSTVSGAGAFRQRVTSD 306
S C DPV + + + GTF GA P RD+ + A ++R D
Sbjct: 386 SGCFSDPVSILEQHIGDKASQGTFSGANSGLNP---GRDNAAAVAAVDQRRFVDD 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,290
Number of Sequences: 5004
Number of extensions: 37911
Number of successful extensions: 125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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