Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.0  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   5.2  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   6.8  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   6.8  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.0  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 118 TYKSTPNHKSNILQYLPY*ITKNFVYDNFS 207
           TY+  PN   N   Y  Y    N ++D+FS
Sbjct: 100 TYRQLPNEPQNSAAYTTYSSFPNALFDDFS 129


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 175 FNMVSIAKYYFYDSELICRF 116
           FN+  IA Y  Y   L+CRF
Sbjct: 415 FNLAIIALYIAYSGPLMCRF 434


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 175  FNMVSIAKYYFYDSELICRFQSYTRNRLESFLKPKCFF 62
            FN   I +  ++  + + +FQ++      SFL+PK  F
Sbjct: 903  FNDRFICESVYHLHDKVSKFQNFPITNTNSFLEPKMLF 940


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 419 IVIDGFTEYRHWHAIKDLG 363
           +V D  T+Y HW A++ LG
Sbjct: 132 VVNDYATKYSHWTAVESLG 150


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 173 KLQKTLSMIIFPSRKFI*IKNKSVKRQNKKQKCTK 277
           KL + LS   F + KFI  ++K   R  K + C K
Sbjct: 472 KLSERLSSSTFDNSKFIRTEDKDTVRSAKLEICEK 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,652
Number of Sequences: 5004
Number of extensions: 38681
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)