Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0780 - 7563080-7563148,7563593-7563728,7564601-7564698,756...    28   5.2  
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770...    27   6.9  

>08_01_0780 -
           7563080-7563148,7563593-7563728,7564601-7564698,
           7565189-7565303,7565469-7565621,7565858-7565943,
           7566537-7567114,7567190-7567307,7567921-7567953
          Length = 461

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 458 LNLIVIMYFNHSCIVIDGFTEYRHWHAIKDLG 363
           ++L ++MYFN S + +  FT Y+  + I D G
Sbjct: 349 ISLFLLMYFNQSKVAMLKFTGYKLLNNISDSG 380


>05_03_0561 -
           15476484-15476649,15476814-15476893,15476971-15477030,
           15477117-15477210,15477287-15477421,15477601-15477656,
           15478359-15478460,15478544-15478651,15479206-15479283,
           15479432-15479521,15480061-15480123
          Length = 343

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 354 RKYT*VFDGMPVAVFCKAIDNYTTMI 431
           RK+  +F+G+   +FC AI  Y  M+
Sbjct: 191 RKWIHLFEGVNAVIFCAAISEYDQML 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,829,582
Number of Sequences: 37544
Number of extensions: 185096
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)