Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    28   4.0  
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    28   5.2  
04_03_1043 - 21957041-21957256,21957347-21957517,21957979-219580...    27   6.9  
04_03_0987 - 21460169-21460467,21460934-21461495,21462756-214631...    27   6.9  

>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 311 VINIFCSFRLRELTSCTEMNFINNNH---TNYGTLNTL 207
           V N+   F   ELT CT  N+   NH    NY TL TL
Sbjct: 249 VYNVVAFFE-NELTMCTAENYDGINHERKLNYSTLTTL 285


>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 260 EMNFINNNHTNYGTLNT-LNTPNRHLLL 180
           ++NF+ +    YG L   LN+PN HL+L
Sbjct: 182 KLNFMGDRDIYYGILTAPLNSPNSHLIL 209


>04_03_1043 -
           21957041-21957256,21957347-21957517,21957979-21958019,
           21958465-21958525,21959191-21960075
          Length = 457

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 131 RIHANISSSVNFAINMLIISVCLACSMCLAYR--NLCDCCL 247
           R H   S   +  +N L+I  C+ CS+ LA     L   CL
Sbjct: 199 RCHIEFSHIESSTLNKLVIEGCIGCSLSLAISAPRLASLCL 239


>04_03_0987 -
           21460169-21460467,21460934-21461495,21462756-21463190,
           21463757-21464185
          Length = 574

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 246 YEIHFCTGCELPKSKATKYIYYLNLRRKTIVWCLSPQCVRVTAVRI 383
           +E  F TGC+ PK+  T++ Y+       ++W L+  C++   ++I
Sbjct: 451 HEWEFVTGCD-PKN--TRWSYHNGGSWPVLLWLLTAACIKTGRLKI 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,917
Number of Sequences: 37544
Number of extensions: 230929
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)