Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 0.42
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 3.9
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 5.2
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 5.2
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 6.8
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 25 6.8
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 25 6.8
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.0
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.0
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 25 9.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 9.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 9.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 9.0
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0... 25 9.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 9.0
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 481 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 395
A R NT Q Y G HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 118 THTQMVPAVPTQLSAVRSFQTTSVTKDIDSAAKFIGAGAAVVLIR 252
+HT P+V T S++ + + DS A FI + +V+ IR
Sbjct: 67 SHTSSSPSVGTSFSSINLREVKNPLAGSDSTAPFINSTNSVLWIR 111
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +3
Query: 27 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 140
+ VC R C ++ + L + +C + DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 176 RPHRSLRTLTLLPNSLVLVQQLFSYAILGFA 268
RP +++ + N+LVLV Y+I GF+
Sbjct: 531 RPQEGSKSMEAIQNALVLVHCRMPYSINGFS 561
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 101 HLQQYPPIHRWYLLSLHSSLQC 166
HL Y P WYL SLH C
Sbjct: 63 HLTIYEPQLTWYLSSLHRITGC 84
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 502 INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 398
I C+ + N H + HH + + SIP +T
Sbjct: 116 IRCVYSEGPSTANAHANAHHQPAQTTTTSIPTSAT 150
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 115 PTHTQMVPAVPTQLSAVRS 171
P HT VPAVP+Q+ + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1
Query: 254 WRMRTTAAPAPMNLAAESMSLVTDVVWKDRTAE 156
W T+ PAP+ L ++ L T +W+ A+
Sbjct: 175 WLAETSNPPAPVTLLDKANVLATSRLWRKTVAK 207
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 451 LHHYEGEVSKHSIPWLSTPD 392
+ Y G VS H + W++ PD
Sbjct: 184 IQQYAGSVSCHVLDWMNPPD 203
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 66 VCHLLQLCTGATT 104
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 514 LHN*INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 398
L++ +NC+ +T +H G SK S+ WL+T
Sbjct: 352 LNSDLNCLKFTHPHIIDTANIYNHTRGPPSKPSLKWLAT 390
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 337 NSLESEEQQERHHKTEQTHSLRQGET 260
NS+ESEE + + + HSL++ T
Sbjct: 68 NSIESEESDKSDYLLDHAHSLQELST 93
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 66 VCHLLQLCTGATT 104
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 66 VCHLLQLCTGATT 104
+CHLL+ CT TT
Sbjct: 218 ICHLLKQCTSVTT 230
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 266 RNPEWRMRTTAAPAPMNLAAESMSLVTDVVW 174
++ +W + +T +P P SM LV +W
Sbjct: 152 KSNQWNLVSTQSPLPSPRTGHSMLLVDSKLW 182
>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
Q0130|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 74
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 239 LFSYAILGFALSE 277
LFS AILGFAL+E
Sbjct: 45 LFSMAILGFALTE 57
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 66 VCHLLQLCTGATT 104
+CHLL+ CT TT
Sbjct: 246 ICHLLKQCTSVTT 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,335
Number of Sequences: 5004
Number of extensions: 45463
Number of successful extensions: 142
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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