Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D06f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69907-1|CAA49532.1| 136|Homo sapiens P1 gene for c subunit of ... 52 1e-06
D13118-1|BAA02420.1| 136|Homo sapiens ATP synthase subunit c pr... 52 1e-06
CR533449-1|CAG38480.1| 136|Homo sapiens ATP5G1 protein. 52 1e-06
BT007230-1|AAP35894.1| 136|Homo sapiens ATP synthase, H+ transp... 52 1e-06
BC004963-1|AAH04963.1| 136|Homo sapiens ATP synthase, H+ transp... 52 1e-06
X69908-1|CAA49533.1| 141|Homo sapiens protein ( H.sapiens gene ... 51 2e-06
D13119-1|BAA02421.1| 141|Homo sapiens ATP synthase subunit c pr... 51 2e-06
BC020826-1|AAH20826.1| 141|Homo sapiens ATP5G2 protein protein. 51 2e-06
U09813-1|AAA78807.1| 142|Homo sapiens mitochondrial ATP synthas... 47 3e-05
M16453-1|AAA51806.1| 100|Homo sapiens ATP5A protein. 47 3e-05
CR407601-1|CAG28411.1| 142|Homo sapiens ATP5G3 protein. 47 3e-05
BC106881-1|AAI06882.1| 142|Homo sapiens ATP synthase, H+ transp... 47 3e-05
AC096649-1|AAX88970.1| 142|Homo sapiens unknown protein. 47 3e-05
M16439-1|AAA51804.1| 58|Homo sapiens ATP5A protein. 33 0.80
AL356104-4|CAH72941.1| 1037|Homo sapiens novel protein similar t... 30 4.3
AL158169-5|CAH70011.1| 1037|Homo sapiens novel protein similar t... 30 4.3
AK098809-1|BAC05419.1| 320|Homo sapiens protein ( Homo sapiens ... 30 4.3
DQ012014-1|AAY59750.1| 62|Homo sapiens beta-defensin 110 protein. 30 5.7
BC130578-1|AAI30579.1| 1935|Homo sapiens ADAM metallopeptidase w... 30 5.7
AJ406937-1|CAC27576.1| 186|Homo sapiens keratin associated prot... 30 5.7
AF488803-1|AAO15765.1| 1935|Homo sapiens a disintegrin-like and ... 30 5.7
AB037733-1|BAA92550.1| 1471|Homo sapiens KIAA1312 protein protein. 30 5.7
BC111698-1|AAI11699.1| 607|Homo sapiens SGSM1 protein protein. 29 7.5
AB275761-1|BAF63511.1| 1093|Homo sapiens small G protein signali... 29 7.5
AB075821-1|BAB85527.1| 1233|Homo sapiens KIAA1941 protein protein. 29 7.5
BC021925-1|AAH21925.1| 551|Homo sapiens tripartite motif-contai... 29 9.9
AL391121-3|CAI40861.1| 550|Homo sapiens tripartite motif-contai... 29 9.9
AF281046-1|AAG53087.1| 551|Homo sapiens glioblastoma-expressed ... 29 9.9
AF220034-1|AAG53488.1| 551|Homo sapiens tripartite motif protei... 29 9.9
>X69907-1|CAA49532.1| 136|Homo sapiens P1 gene for c subunit of
human mitochondrial ATP protein.
Length = 136
Score = 52.0 bits (119), Expect = 1e-06
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Frame = +1
Query: 79 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFIGAGAA 237
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKFIGAGAA
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 238 VVLIRHSGFRLV*GYGSVL 294
V + SG + +GS++
Sbjct: 76 TVGVAGSGAGIGTVFGSLI 94
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 103 LKQQLFSYAILGFALSE 119
>D13118-1|BAA02420.1| 136|Homo sapiens ATP synthase subunit c
precursor protein.
Length = 136
Score = 52.0 bits (119), Expect = 1e-06
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Frame = +1
Query: 79 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFIGAGAA 237
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKFIGAGAA
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 238 VVLIRHSGFRLV*GYGSVL 294
V + SG + +GS++
Sbjct: 76 TVGVAGSGAGIGTVFGSLI 94
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 103 LKQQLFSYAILGFALSE 119
>CR533449-1|CAG38480.1| 136|Homo sapiens ATP5G1 protein.
Length = 136
Score = 52.0 bits (119), Expect = 1e-06
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Frame = +1
Query: 79 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFIGAGAA 237
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKFIGAGAA
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 238 VVLIRHSGFRLV*GYGSVL 294
V + SG + +GS++
Sbjct: 76 TVGVAGSGAGIGTVFGSLI 94
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 103 LKQQLFSYAILGFALSE 119
>BT007230-1|AAP35894.1| 136|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit c
(subunit 9), protein.
Length = 136
Score = 52.0 bits (119), Expect = 1e-06
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Frame = +1
Query: 79 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFIGAGAA 237
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKFIGAGAA
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 238 VVLIRHSGFRLV*GYGSVL 294
V + SG + +GS++
Sbjct: 76 TVGVAGSGAGIGTVFGSLI 94
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 103 LKQQLFSYAILGFALSE 119
>BC004963-1|AAH04963.1| 136|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit C1
(subunit 9) protein.
Length = 136
Score = 52.0 bits (119), Expect = 1e-06
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Frame = +1
Query: 79 CNSALVRPLAAV----PTHTQMVPAV---PTQLSAVRSFQTTSVTKDIDSAAKFIGAGAA 237
C L+RP++A P ++ P+ P Q+ A R FQT+ V++DID+AAKFIGAGAA
Sbjct: 17 CTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQV-ARREFQTSVVSRDIDTAAKFIGAGAA 75
Query: 238 VVLIRHSGFRLV*GYGSVL 294
V + SG + +GS++
Sbjct: 76 TVGVAGSGAGIGTVFGSLI 94
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 103 LKQQLFSYAILGFALSE 119
>X69908-1|CAA49533.1| 141|Homo sapiens protein ( H.sapiens gene for
mitochondrial ATP synthase c subunit (P2 form). ).
Length = 141
Score = 51.2 bits (117), Expect = 2e-06
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +1
Query: 148 TQLSAVRSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
T L + RSFQT+++++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 51 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 99
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 108 LKQQLFSYAILGFALSE 124
>D13119-1|BAA02421.1| 141|Homo sapiens ATP synthase subunit c
precursor protein.
Length = 141
Score = 51.2 bits (117), Expect = 2e-06
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +1
Query: 148 TQLSAVRSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
T L + RSFQT+++++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 51 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 99
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 108 LKQQLFSYAILGFALSE 124
>BC020826-1|AAH20826.1| 141|Homo sapiens ATP5G2 protein protein.
Length = 141
Score = 51.2 bits (117), Expect = 2e-06
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +1
Query: 148 TQLSAVRSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
T L + RSFQT+++++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 51 TSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 99
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 108 LKQQLFSYAILGFALSE 124
>U09813-1|AAA78807.1| 142|Homo sapiens mitochondrial ATP synthase
subunit 9 precursor protein.
Length = 142
Score = 47.2 bits (107), Expect = 3e-05
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1
Query: 166 RSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
R FQT+++++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 100
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 109 LKQQLFSYAILGFALSE 125
>M16453-1|AAA51806.1| 100|Homo sapiens ATP5A protein.
Length = 100
Score = 47.2 bits (107), Expect = 3e-05
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +1
Query: 145 PTQLSAVRSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
P Q+ A R FQT+ V++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 10 PLQV-ARRGFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 58
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 67 LKQQLFSYAILGFALSE 83
>CR407601-1|CAG28411.1| 142|Homo sapiens ATP5G3 protein.
Length = 142
Score = 47.2 bits (107), Expect = 3e-05
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1
Query: 166 RSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
R FQT+++++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 100
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 109 LKQQLFSYAILGFALSE 125
>BC106881-1|AAI06882.1| 142|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit C3
(subunit 9) protein.
Length = 142
Score = 47.2 bits (107), Expect = 3e-05
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1
Query: 166 RSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
R FQT+++++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 100
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 109 LKQQLFSYAILGFALSE 125
>AC096649-1|AAX88970.1| 142|Homo sapiens unknown protein.
Length = 142
Score = 47.2 bits (107), Expect = 3e-05
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1
Query: 166 RSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSGFRLV*GYGSVL 294
R FQT+++++DID+AAKFIGAGAA V + SG + +GS++
Sbjct: 58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI 100
Score = 33.9 bits (74), Expect = 0.35
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 109 LKQQLFSYAILGFALSE 125
>M16439-1|AAA51804.1| 58|Homo sapiens ATP5A protein.
Length = 58
Score = 32.7 bits (71), Expect = 0.80
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAI+GFALSE
Sbjct: 25 LKQQLFSYAIVGFALSE 41
>AL356104-4|CAH72941.1| 1037|Homo sapiens novel protein similar to
mouse Jedi soluble isoform 736 protein protein.
Length = 1037
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 180 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQ 46
G GP+C + CR GG C +++ QCR A PG GD+
Sbjct: 266 GFHGPNCSQECRCHN-----GGLCDRFTGQCRCA----PGYTGDR 301
>AL158169-5|CAH70011.1| 1037|Homo sapiens novel protein similar to
mouse Jedi soluble isoform 736 protein protein.
Length = 1037
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 180 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQ 46
G GP+C + CR GG C +++ QCR A PG GD+
Sbjct: 266 GFHGPNCSQECRCHN-----GGLCDRFTGQCRCA----PGYTGDR 301
>AK098809-1|BAC05419.1| 320|Homo sapiens protein ( Homo sapiens
cDNA FLJ25943 fis, clone JTH10559. ).
Length = 320
Score = 30.3 bits (65), Expect = 4.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 180 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQ 46
G GP+C + CR GG C +++ QCR A PG GD+
Sbjct: 67 GFHGPNCSQECRCHN-----GGLCDRFTGQCRCA----PGYTGDR 102
>DQ012014-1|AAY59750.1| 62|Homo sapiens beta-defensin 110 protein.
Length = 62
Score = 29.9 bits (64), Expect = 5.7
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 189 DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRV 82
+RC C+ C D Y GYC KW QC V
Sbjct: 30 ERCEKVRGICKTFCDDVEYDY---GYCIKWRSQCCV 62
>BC130578-1|AAI30579.1| 1935|Homo sapiens ADAM metallopeptidase with
thrombospondin type 1 motif, 9 protein.
Length = 1935
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 189 DRCGLEGPHCRELCRDSRYHLCMGGYCCKW 100
D LE +C+ L + + C GG C KW
Sbjct: 1472 DGSHLESDYCKHLAKPHGHRKCRGGRCPKW 1501
>AJ406937-1|CAC27576.1| 186|Homo sapiens keratin associated protein
4.5 protein.
Length = 186
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 207 CCQIHWCWCSSCSHTPFWVSPCLRLWVCSVL*WRSCC 317
CCQ C+ +C H +S C R + C R CC
Sbjct: 45 CCQ-SVCYQPTCCHPSCCISSCCRPYCCESSCCRPCC 80
>AF488803-1|AAO15765.1| 1935|Homo sapiens a disintegrin-like and
metalloprotease with thrombospondin type 1 motifs 9B
protein.
Length = 1935
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 189 DRCGLEGPHCRELCRDSRYHLCMGGYCCKW 100
D LE +C+ L + + C GG C KW
Sbjct: 1472 DGSHLESDYCKHLAKPHGHRKCRGGRCPKW 1501
>AB037733-1|BAA92550.1| 1471|Homo sapiens KIAA1312 protein protein.
Length = 1471
Score = 29.9 bits (64), Expect = 5.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 189 DRCGLEGPHCRELCRDSRYHLCMGGYCCKW 100
D LE +C+ L + + C GG C KW
Sbjct: 1314 DGSHLESDYCKHLAKPHGHRKCRGGRCPKW 1343
>BC111698-1|AAI11699.1| 607|Homo sapiens SGSM1 protein protein.
Length = 607
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 460 HQSLHHYEGEVSKHSIPWLSTPDSI 386
H S H++ +S+HS P LST DS+
Sbjct: 228 HPSSHNFSSGLSEHSEPSLSTEDSV 252
>AB275761-1|BAF63511.1| 1093|Homo sapiens small G protein signaling
modulator 1 protein protein.
Length = 1093
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 460 HQSLHHYEGEVSKHSIPWLSTPDSI 386
H S H++ +S+HS P LST DS+
Sbjct: 714 HPSSHNFSSGLSEHSEPSLSTEDSV 738
>AB075821-1|BAB85527.1| 1233|Homo sapiens KIAA1941 protein protein.
Length = 1233
Score = 29.5 bits (63), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 460 HQSLHHYEGEVSKHSIPWLSTPDSI 386
H S H++ +S+HS P LST DS+
Sbjct: 854 HPSSHNFSSGLSEHSEPSLSTEDSV 878
>BC021925-1|AAH21925.1| 551|Homo sapiens tripartite
motif-containing 8 protein.
Length = 551
Score = 29.1 bits (62), Expect = 9.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 54 PCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPDHIGH*GH*LCCQIHWCWC 233
PCS HL+ L GA S+ + +A +LP + G L C + C+C
Sbjct: 418 PCSSTQHLVALPGGAQPVHSSPVFPPSQYPNGSAAQQPMLPQYGGR--KILVCSVDNCYC 475
Query: 234 SSCSH 248
SS ++
Sbjct: 476 SSVAN 480
>AL391121-3|CAI40861.1| 550|Homo sapiens tripartite
motif-containing 8 protein.
Length = 550
Score = 29.1 bits (62), Expect = 9.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 54 PCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPDHIGH*GH*LCCQIHWCWC 233
PCS HL+ L GA S+ + +A +LP + G L C + C+C
Sbjct: 417 PCSSTQHLVALPGGAQPVHSSPVFPPSQYPNGSAAQQPMLPQYGGR--KILVCSVDNCYC 474
Query: 234 SSCSH 248
SS ++
Sbjct: 475 SSVAN 479
>AF281046-1|AAG53087.1| 551|Homo sapiens glioblastoma-expressed
RING finger protein GERP protein.
Length = 551
Score = 29.1 bits (62), Expect = 9.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 54 PCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPDHIGH*GH*LCCQIHWCWC 233
PCS HL+ L GA S+ + +A +LP + G L C + C+C
Sbjct: 418 PCSSTQHLVALPGGAQPVHSSPVFPPSQYPNGSAAQQPMLPQYGGR--KILVCSVDNCYC 475
Query: 234 SSCSH 248
SS ++
Sbjct: 476 SSVAN 480
>AF220034-1|AAG53488.1| 551|Homo sapiens tripartite motif protein
TRIM8 protein.
Length = 551
Score = 29.1 bits (62), Expect = 9.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 54 PCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPDHIGH*GH*LCCQIHWCWC 233
PCS HL+ L GA S+ + +A +LP + G L C + C+C
Sbjct: 418 PCSSTQHLVALPGGAQPVHSSPVFPPSQYPNGSAAQQPMLPQYGGR--KILVCSVDNCYC 475
Query: 234 SSCSH 248
SS ++
Sbjct: 476 SSVAN 480
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,711,204
Number of Sequences: 237096
Number of extensions: 1961318
Number of successful extensions: 9856
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 9337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9837
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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