Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 42 3e-04
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 42 3e-04
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 42 3e-04
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 2.7
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 2.7
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 2.7
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 25 2.9
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 25 2.9
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 25 2.9
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 28 3.5
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z79639-3|CAB01918.1| 385|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 27 8.1
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 27 8.1
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 27 8.1
U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 27 8.1
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 27 8.1
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 27 8.1
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +1
Query: 160 AVRSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSG 261
A R TT KDIDSAAK+IGAGAA V + SG
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSG 39
Score = 33.9 bits (74), Expect = 0.071
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 59 LKQQLFSYAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +1
Query: 160 AVRSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSG 261
A R TT KDIDSAAK+IGAGAA V + SG
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSG 39
Score = 33.9 bits (74), Expect = 0.071
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 59 LKQQLFSYAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = +1
Query: 160 AVRSFQTTSVTKDIDSAAKFIGAGAAVVLIRHSG 261
A R TT KDIDSAAK+IGAGAA V + SG
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSG 63
Score = 33.9 bits (74), Expect = 0.071
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 227 LVQQLFSYAILGFALSE 277
L QQLFSYAILGFALSE
Sbjct: 83 LKQQLFSYAILGFALSE 99
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 365 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 451
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +3
Query: 87 CTGATTCSSTHPYTDGTCCPYTALCSAVLP 176
C+ C + D CCPY + C A P
Sbjct: 189 CSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 27 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 152
N C P + C+ T C+S + +G CCP T
Sbjct: 106 NTQCGSNSSPQVSASGQVVTCSTNTQCASGYTCNNGACCPNT 147
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 25.0 bits (52), Expect(2) = 2.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 66 VCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 161
+C +L +T S+ HP +G+ C C
Sbjct: 497 ICRILWCGNSGSTISTAHPALEGSWCGANKWC 528
Score = 21.8 bits (44), Expect(2) = 2.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Frame = +3
Query: 207 CCQIHWCWCSSCSHTPFWVSP 269
C WC C+H F ++P
Sbjct: 522 CGANKWCHKGQCTHWTFGLTP 542
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
protein C02B4.1 protein.
Length = 1461
Score = 25.0 bits (52), Expect(2) = 2.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 66 VCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 161
+C +L +T S+ HP +G+ C C
Sbjct: 497 ICRILWCGNSGSTISTAHPALEGSWCGANKWC 528
Score = 21.8 bits (44), Expect(2) = 2.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Frame = +3
Query: 207 CCQIHWCWCSSCSHTPFWVSP 269
C WC C+H F ++P
Sbjct: 522 CGANKWCHKGQCTHWTFGLTP 542
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 25.0 bits (52), Expect(2) = 2.9
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +3
Query: 66 VCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 161
+C +L +T S+ HP +G+ C C
Sbjct: 497 ICRILWCGNSGSTISTAHPALEGSWCGANKWC 528
Score = 21.8 bits (44), Expect(2) = 2.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Frame = +3
Query: 207 CCQIHWCWCSSCSHTPFWVSP 269
C WC C+H F ++P
Sbjct: 522 CGANKWCHKGQCTHWTFGLTP 542
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Frame = +3
Query: 84 LCTGATTCSSTHPYTDGTCCPYTALCSAVLPDHIGH*GH*LCCQIHWCWCSSCSHTPFWV 263
LC TTC D CP ALC LP+ + G C++ C H +
Sbjct: 575 LCANGTTCREDRVKCDKRPCPIRALC---LPNFQPN-GKPSFCEVAGCGAGEICHETIEI 630
Query: 264 ---SPCLRLWVC 290
PC + C
Sbjct: 631 CGEPPCRSMATC 642
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 490 PVDAHCRCNTHQSLHHYEGEV 428
P+ CRCNT +LH EG V
Sbjct: 98 PIYVLCRCNTTNTLHRREGVV 118
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 207 RVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGYCCKWSHQC 88
RV ++ C P CR +LC SRY M YC K C
Sbjct: 321 RVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENYCPKACGHC 363
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 78 LQLCTGATTCSSTHPYTDGTCCPYTA 155
+Q C+G C TH + CCP A
Sbjct: 373 VQRCSGKEHCPETHDCKNTVCCPKPA 398
>Z79639-3|CAB01918.1| 385|Caenorhabditis elegans Hypothetical
protein F54E4.4 protein.
Length = 385
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 198 H*LCCQIHWCWCSSCSHTPFWV 263
H LCC W CS PFW+
Sbjct: 259 HSLCC--FWATTGECSRNPFWM 278
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 409 MESNVWKPHPHSDARTDVCYTYSARQQECNLFNY 510
M SNV P S +VC TY +++ NL Y
Sbjct: 1038 MASNVKTPLNPSMTAVEVCQTYKGKRESENLVGY 1071
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
protein F52G2.2b protein.
Length = 1129
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 409 MESNVWKPHPHSDARTDVCYTYSARQQECNLFNY 510
M SNV P S +VC TY +++ NL Y
Sbjct: 848 MASNVKTPLNPSMTAVEVCQTYKGKRESENLVGY 881
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 33 VCRQT-DRPCSQVCHLLQLCTGATT---CSSTHPYTDGTCC 143
+C+QT C Q ++ C +++ CSS + G+CC
Sbjct: 330 ICQQTCQNTCQQAAQIVVPCQSSSSGCGCSSGYSQCGGSCC 370
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 152 CVGTAGTICVWVGTAASG-RTSAELQK 75
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 152 CVGTAGTICVWVGTAASG-RTSAELQK 75
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 152 CVGTAGTICVWVGTAASG-RTSAELQK 75
CVG GT+C + +G +TS +LQK
Sbjct: 375 CVGVLGTVCDVIQLGVTGSKTSPDLQK 401
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 152 CVGTAGTICVWVGTAASG-RTSAELQK 75
CVG GT+C + +G +TS +LQK
Sbjct: 416 CVGVLGTVCDVIQLGVTGSKTSPDLQK 442
>U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical
protein F13H8.11 protein.
Length = 460
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 116 PPIHRWYLLSLHSSLQCGPSRPHRSLRTLTLLPNS 220
PP+ YL ++ +S C PSR R LR + +S
Sbjct: 368 PPVECPYLRTIQNSENCEPSREMRFLRVPSAFASS 402
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 24 QNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYT 152
QN C P + C + C+S + ++G CCP T
Sbjct: 72 QNTQCGTNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNT 114
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 114 YCCKWSHQCRVAEDGRPGCR 55
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 114 YCCKWSHQCRVAEDGRPGCR 55
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 114 YCCKWSHQCRVAEDGRPGCR 55
Y C++S +CR+ + GR CR
Sbjct: 87 YVCRYSKKCRIDKAGRNVCR 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,983
Number of Sequences: 27780
Number of extensions: 288956
Number of successful extensions: 1115
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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