Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 217 8e-58
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 216 1e-57
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 175 2e-45
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 30 0.24
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.42
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 28 0.97
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 6.8
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 6.8
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 25 6.8
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 25 6.8
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 6.8
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 9.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 9.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 9.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.0
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 217 bits (530), Expect = 8e-58
Identities = 94/159 (59%), Positives = 129/159 (81%), Gaps = 1/159 (0%)
Frame = -2
Query: 517 FVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 338
FVIRIRGIN + PK RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G PNLK+V
Sbjct: 93 FVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTV 152
Query: 337 RELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWP 158
REL+YKRGF K++ QRI ++ N+I+E L K++I+ +EDLIHEI+TVG FK A+NF+WP
Sbjct: 153 RELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWP 212
Query: 157 FKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRRMV 44
F+L++P GGWR +K H+++GGD G R++ IN L+R+M+
Sbjct: 213 FQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 216 bits (528), Expect = 1e-57
Identities = 93/159 (58%), Positives = 128/159 (80%), Gaps = 1/159 (0%)
Frame = -2
Query: 517 FVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 338
FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G PN K+V
Sbjct: 92 FVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTV 151
Query: 337 RELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWP 158
REL+YKRGF K++ QRIP++ N+I+E L K++I+ VEDLIHEI+TVG FK A+NFLWP
Sbjct: 152 RELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWP 211
Query: 157 FKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRRMV 44
FKL++P GGWR +K H+++GGD G R++ IN L+++M+
Sbjct: 212 FKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 175 bits (427), Expect = 2e-45
Identities = 81/159 (50%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Frame = -2
Query: 517 FVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 338
FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLRI EPY+ +G PNL SV
Sbjct: 91 FVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSV 150
Query: 337 RELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWP 158
REL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI+ VG FK + FLWP
Sbjct: 151 RELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWP 210
Query: 157 FKLNNPTGG-WRKKTIHYVDGGDFGNREDKINDLLRRMV 44
F L KK H+ +G G ++IN+L+++ V
Sbjct: 211 FTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKKQV 249
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.24
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 352 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 176
N KSV + G L+G +I I+ + ++ R+ VE +L H++ + K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201
Query: 175 SNFLWPFK 152
S F PF+
Sbjct: 202 SGFFGPFR 209
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.42
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 123 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 257
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 110 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 205
MNGL P W + GP + R++ F E
Sbjct: 75 MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 179 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 358
+L +F+ +D M L T+N + +L +A W TL G + F Y L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376
Query: 359 S 361
S
Sbjct: 377 S 377
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 6.8
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +3
Query: 120 FLRQPPVGLFNL---KGHRKLLAYLNFSP-TVKISWMRSSTQIMLCLWSLFSTMLLEVIG 287
+LR+P + N KG L+ +F+ T + S + S LC F+ E IG
Sbjct: 854 YLRKPHMSRENFGISKGSGGLIGSFDFNKFTRQASKVHGSWISSLCSSQAFA----EFIG 909
Query: 288 IRCPLSLANPRL 323
RC L L +PR+
Sbjct: 910 DRCELDLNDPRV 921
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +3
Query: 144 LFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGI 290
LF+L G L ++ + T+K SW ++ + L + ++++ I
Sbjct: 76 LFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 134 WLAQEDHSLCRRGRLW*PRRQDQRSSQED 48
WL ++ H+ + +LW R+DQ S +D
Sbjct: 31 WLIKKGHATSTKKQLWAVLRRDQLSFYKD 59
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +2
Query: 71 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVF 247
L+ + KVS +++G L+ ++I Q + + + +FS + D+ + + T N +F
Sbjct: 121 LMSSTDKVSRKTMISGALSRALAYINQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIF 179
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 397 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 266
N +I+ PY GYP +K + L YK KLS +PI + I
Sbjct: 35 NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 164 QEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLST 301
QE ++ L S+++ L+D ++ M+P+ N+ SD +TL T
Sbjct: 124 QETSKDLCRSSSTQHLLDHQTTDSTIIDMKPVSTNS-KSDVFTLYT 168
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 101 VDIMNGLLAPTTSWIVQFEGPQEITRVLELFSN-----SEDLMDEVLNTDNVVFMEPLLN 265
++I + L AP+ SW + E+ +L + S + + +E+ TD V LL
Sbjct: 763 LEIDSNLFAPSNSWFNSWHSRLELDSILAIISQFSLPVYKKMNEELSTTDEAV---KLLA 819
Query: 266 NAVGSD 283
N+V +D
Sbjct: 820 NSVLND 825
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 176 RVLELFSNSEDLMDE--VLNTDNVVFMEPLLNN 268
RV E+F +S DL++E + DNV EP N
Sbjct: 300 RVAEIFKDSPDLLEEFKLFLPDNVDSTEPSTPN 332
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +2
Query: 26 YKSIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 205
+ ++ HP + + K+ + I++ L VQ + E+ ++ LF NSE
Sbjct: 1732 FYEVFFQHPSTNVYANDEGI-KIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFGNSE 1788
Query: 206 DLMDEVLN 229
D+M + L+
Sbjct: 1789 DVMIKQLS 1796
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,280
Number of Sequences: 5004
Number of extensions: 50835
Number of successful extensions: 139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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