Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 242 1e-64
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 234 3e-62
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 138 3e-33
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 32 0.32
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 5.2
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 6.9
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 27 6.9
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 27 9.1
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 27 9.1
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 242 bits (592), Expect = 1e-64
Identities = 107/157 (68%), Positives = 132/157 (84%)
Frame = -2
Query: 517 FVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 338
FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSV
Sbjct: 88 FVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSV 147
Query: 337 RELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWP 158
REL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+EDL+HEI TVG FK A+NFLWP
Sbjct: 148 RELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWP 207
Query: 157 FKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 47
FKL P GG +KK HYV+GGD GNRED IN+L+RRM
Sbjct: 208 FKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 234 bits (573), Expect = 3e-62
Identities = 107/163 (65%), Positives = 133/163 (81%), Gaps = 6/163 (3%)
Frame = -2
Query: 517 FVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 338
FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLKSV
Sbjct: 87 FVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSV 146
Query: 337 RELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICVEDLIHEIFTVGEKFKYA 176
REL+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+EDL+HEI TVG FK A
Sbjct: 147 RELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEA 206
Query: 175 SNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 47
+NFLWPFKL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 207 NNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 138 bits (333), Expect = 3e-33
Identities = 63/142 (44%), Positives = 94/142 (66%)
Frame = -2
Query: 517 FVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSV 338
F IRI G + P +R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK+V
Sbjct: 90 FAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLKNV 149
Query: 337 RELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWP 158
++L+YK+G L + P+TSN ++EK L ++ IIC+EDL+HEI +VG F+ ASNFL P
Sbjct: 150 KDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASNFLMP 209
Query: 157 FKLNNPTGGWRKKTIHYVDGGD 92
FKL P + K + DG +
Sbjct: 210 FKLKCPERRLQMKKKPFKDGAE 231
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +2
Query: 71 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFM 250
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL + + M
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 251 E---PLLNNAVGSD 283
LL+N +GSD
Sbjct: 1172 PKIYSLLSNLIGSD 1185
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 374 LHCLGIPQLKECP*VSIQTWIRQAEW 297
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 268 IVEKRLHKHNIICVEDLIHEI 206
I K LH+H I VEDL+H +
Sbjct: 106 INHKHLHRHYSIGVEDLVHHV 126
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 27.5 bits (58), Expect = 6.9
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Frame = -2
Query: 430 GVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGF--------AKLSGQRIPITS 275
GV V +K ML ++ +P + S RE +K F AKLS ++I +
Sbjct: 191 GVPVHDDKKLFEMLVLSGALAEMTWPAILSKRE-TFKEVFMDFDPLLVAKLSERKI-LGP 248
Query: 274 NSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG 131
S L +H + + + E+ V E+F N+ W F + P G
Sbjct: 249 CSPARSLLSEHRLRIIIENAQEVLKVIEEFGSFDNYCWGFLNSKPMVG 296
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 174 LAYLNFSPTVKISWMRSSTQIMLCL 248
L++ +F PTV++ +RS T + LCL
Sbjct: 192 LSHCSFRPTVEVVSLRSLTSLDLCL 216
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 123 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 257
LR P + GH+K ++Y+ F T +++ +ST L LW +
Sbjct: 545 LRNPSAPVHVFGGHKKAVSYVKFLSTNELA--SASTDSTLRLWDV 587
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,053,740
Number of Sequences: 37544
Number of extensions: 322181
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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