Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D03f
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   197   8e-52
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   195   2e-51
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    41   8e-05
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.35 
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   1.8  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   5.6  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    24   9.8  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    24   9.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    24   9.8  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    24   9.8  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  197 bits (480), Expect = 8e-52
 Identities = 90/117 (76%), Positives = 104/117 (88%)
 Frame = -1

Query: 433 RTPKRLFEGNALLRRXVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 254
           + PKRLFEGNA++RR VR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 253 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 83
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR  Q
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  195 bits (476), Expect = 2e-51
 Identities = 89/114 (78%), Positives = 103/114 (90%)
 Frame = -1

Query: 433 RTPKRLFEGNALLRRXVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 254
           + PKRLFEGNA++RR VR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 253 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 92
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = -1

Query: 427 PKRLFEGNALLRRXVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 248
           P RL   N LL +   +G+L  K    D      +     RRL   + K  +++ +  A 
Sbjct: 69  PFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEAT 128

Query: 247 ILIRQRHIRVRKQVVNIPSFIV 182
            LI Q H+RV   V+  P+++V
Sbjct: 129 RLIEQGHVRVGPHVITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 326  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 195
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 355 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 224
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 200 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 99
           HP +    GL Q H +   ++  W SSW   ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -3

Query: 176 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGW 78
           G + A  +L ++S  W+ +W  +E++      W
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKW 415


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -1

Query: 307 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 152
           R L       G+ ++I+ +++L     + +RK   N+P ++  LD+ + + F
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTF 161


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 379 IGVLDEKQMKLDYVLGLKIEDFLERR 302
           +G++ EK M+LD V G K+E  ++RR
Sbjct: 101 MGLVGEK-MELDAVKGRKVESRVDRR 125


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 268 KSIHHARILIRQRHIRVRKQVVNIPSFIVRL 176
           +S+ H R L   +H+R+     N P+ I +L
Sbjct: 306 RSLDHLRTLENLKHLRITLSYFNKPTDIAKL 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,498
Number of Sequences: 5004
Number of extensions: 36522
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)