Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328D03f
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   209   8e-55
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    35   0.033
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   1.6  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   2.1  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    28   2.8  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   6.5  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   6.5  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   6.5  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   6.5  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   6.5  
AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rna...    27   6.5  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  209 bits (510), Expect = 8e-55
 Identities = 98/116 (84%), Positives = 109/116 (93%)
 Frame = -1

Query: 433 RTPKRLFEGNALLRRXVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 254
           + PKRLFEGNALLRR V+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHH 124

Query: 253 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 86
           ARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 125 ARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -1

Query: 316 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 140
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -3

Query: 362 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 192
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 199 CSQLACGHEYAFAGSKFWHDG 261
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 GCSQLACGHEYAFAGSKFWH 255
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 454 PGPPSRRRTPKRLFEGNALLRRXVRIGVLDE 362
           P PP+        FEG  ++R   R+GV++E
Sbjct: 604 PQPPTAGAVQSSKFEGREMIREVKRVGVVEE 634


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = -1

Query: 328 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 203
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = -1

Query: 328 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 203
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 269 EVHPSCQNFDP------AKAYSCPQASCEHPII 189
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 269 EVHPSCQNFDP------AKAYSCPQASCEHPII 189
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 269 EVHPSCQNFDP------AKAYSCPQASCEHPII 189
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 269 EVHPSCQNFDP------AKAYSCPQASCEHPII 189
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = -3

Query: 269 EVHPSCQNFDP------AKAYSCPQASCEHPII 189
           +VH   QNFD       AKA S PQ + EHP I
Sbjct: 778 DVHDELQNFDQHIKVLHAKAESLPQEAREHPDI 810


>AF036706-17|AAK39277.2|  582|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 1, isoform b protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 364 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 209
           EK    +Y+   + EDF +   +  +FK G  KS   AR +I    + V  +
Sbjct: 427 EKMAIREYLENKQTEDFAKIAAERGIFKIGEIKSYQTARPIIEDDDVDVESE 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,586,513
Number of Sequences: 27780
Number of extensions: 225422
Number of successful extensions: 682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)