Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D01f
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 49 4e-07
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 33 0.022
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 29 0.28
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 0.64
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 0.84
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 27 1.1
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 3.4
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 26 3.4
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 4.5
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 5.9
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 25 5.9
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 7.8
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 7.8
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 48.8 bits (111), Expect = 4e-07
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Frame = +3
Query: 87 EEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE- 263
E++ +I++DW QT + + I K + V + + +L L + S +SL L+
Sbjct: 178 EKLSNRIRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDG-SIFSLVLDP 236
Query: 264 LAHEIIPTMCSYVVSPSKIEIKLRKK-EGLRWNQLEGEGTEKKVKAIPQAVIDASGPQQP 440
L EI+P S+ + SK+EI L KK ++W L V + +S
Sbjct: 237 LYEEIVPEKSSFKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGNT 296
Query: 441 PQLFXKDWNKIEK 479
KDW+ + K
Sbjct: 297 KNK-AKDWDSLAK 308
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 33.1 bits (72), Expect = 0.022
Identities = 14/73 (19%), Positives = 38/73 (52%)
Frame = +3
Query: 156 IKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEIKLR 335
++N + V +++ R + P P + ++Y + L+H +I + S + +++ ++L+
Sbjct: 120 LRNDKASTVNIEFPYREGIVTHPSPQAKNKYIINAGLSHNVIVSSPSVLAPRTRVTVRLK 179
Query: 336 KKEGLRWNQLEGE 374
+ QL+G+
Sbjct: 180 AQSPNEEGQLQGD 192
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 29.5 bits (63), Expect = 0.28
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 99 PKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE 263
PK+++ E Q ++T + NA +DQ + Q S+ S S L +S+S Y L+ E
Sbjct: 77 PKLENVVKSPEGQKLITESLINATTDQNESQASQAKQS-SAQLSDSESGYPLDHE 130
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 0.64
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 114 DWYQTESQVVVTILIKNALS-DQVKVQYSERSL--SFS 218
DWY TE+ V++ LI ALS + VK Y ++ SFS
Sbjct: 1148 DWYSTENLTVLSTLIAAALSPNVVKCVYPDKKFVASFS 1185
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 27.9 bits (59), Expect = 0.84
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 213 FSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEI 326
+ CP+PN D Y + L + + CS + +P+ I
Sbjct: 350 YKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPI 387
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 357 NQLEGEGTEKKVKAIPQAVIDASGPQQPPQLFXK 458
N +G + + IPQ V DAS Q PP+L+ K
Sbjct: 270 NMRQGAARCQARRLIPQKVRDASFYQGPPELYKK 303
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 3.4
Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +3
Query: 141 VVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKI 320
V+ I +K + ++V+Y LS + + E +LE +++ + +YV+S
Sbjct: 478 VLRIAVKTFADETLEVKYQILELSVRLYVLSHSEEKQNDLESRDDVVSLLFNYVLSLIHF 537
Query: 321 EIKLRKKEGLR-WNQLEGEGTEKKVKAIPQAVIDASGPQQPPQLFXKDW 464
++ ++ R + +L + + + I V+++ G Q + +D+
Sbjct: 538 DMSYDLRDRARFYKELASTPSSEFTRRI---VLESKGNSQKEIIASRDY 583
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 166 AFLINIVTTTCDSVWYQSCLIFGLISSETQEFFCSSDIIYG 44
+FL++ T + SC+ FG+I + F C + I+ G
Sbjct: 35 SFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGG 75
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 164 ILD*YSDNHL*LRLVPIMF 108
ILD Y +NHL LR VPI +
Sbjct: 277 ILDEYWNNHLDLRSVPIYY 295
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 199 SLYWTLTWSLRAFLINIVTTTCDSVWYQSCLIFGLISSETQEFFCSSDIIY 47
SL W +L A+ + + T C+ + + FG E ++ FCS Y
Sbjct: 281 SLAWNGPSALDAYTVFAIETLCEFLSESAVSPFGQTFVEIEDPFCSFVYFY 331
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.0 bits (52), Expect = 5.9
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 114 DWYQTESQVVVTIL-IKNALSDQVKVQYSERSLS---FSCPLPNSDSEYSLELELAHEII 281
++++ + ++ TI +N+L+ Q K+Q SERS+ + P+ S S+ + +I
Sbjct: 207 NFFKESTGILNTIFNSQNSLTPQKKIQSSERSVENEFLASPMDPSLSKLFTKTTNTEKIS 266
Query: 282 PTMCSYVVSPSKIE 323
PT S SK E
Sbjct: 267 PTPFSTPKRKSKKE 280
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 175 TKSKSSTVNEVYPFLVRYLTQTPSTVWNLN 264
T VNE Y F+ + + ST WN N
Sbjct: 543 TSDTQPDVNENYSFISNSIPKNLSTSWNQN 572
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 7.8
Identities = 16/81 (19%), Positives = 32/81 (39%)
Frame = -3
Query: 325 ISIFDGLTT*LHIVGIISCANSSSKLYSESELGNGQEKDRLRSLYWTLTWSLRAFLINIV 146
I + D + T + G NSS + E + + RS T + L + +
Sbjct: 229 ILLDDNMRTKITDFGSAKILNSSHGSHEEDTHHADKPQAHSRSFVGTARYVSPEVLSDKI 288
Query: 145 TTTCDSVWYQSCLIFGLISSE 83
T +W C++F +++ +
Sbjct: 289 AGTASDIWAFGCILFQMLAGK 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,771
Number of Sequences: 5004
Number of extensions: 35236
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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