Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328D01f
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 50 9e-07
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 50 9e-07
Z74030-14|CAA98442.1| 198|Caenorhabditis elegans Hypothetical p... 41 4e-04
L16621-13|ABD63202.1| 141|Caenorhabditis elegans Hypothetical p... 31 0.57
AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical ... 29 2.3
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 29 2.3
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 29 2.3
Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical pr... 28 4.0
X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein ... 28 4.0
U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical pr... 27 5.3
U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical p... 27 7.0
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 27 7.0
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 27 7.0
U46671-3|AAY86216.1| 133|Caenorhabditis elegans Hypothetical pr... 27 9.3
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 50.0 bits (114), Expect = 9e-07
Identities = 23/95 (24%), Positives = 45/95 (47%)
Frame = +3
Query: 84 SEEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE 263
+ EI K + DW+ + V + + + AL + + ++ S ++ L+ +
Sbjct: 214 NNEIVSKFREDWFSSNGFVTINVYCRGALPETANIVSDGHTVRVSMKHGFGNASVDLDYD 273
Query: 264 LAHEIIPTMCSYVVSPSKIEIKLRKKEGLRWNQLE 368
L E+IP V+ K+EI L++K G W +L+
Sbjct: 274 LWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLK 308
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 50.0 bits (114), Expect = 9e-07
Identities = 23/95 (24%), Positives = 45/95 (47%)
Frame = +3
Query: 84 SEEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELE 263
+ EI K + DW+ + V + + + AL + + ++ S ++ L+ +
Sbjct: 214 NNEIVSKFREDWFSSNGFVTINVYCRGALPETANIVSDGHTVRVSMKHGFGNASVDLDYD 273
Query: 264 LAHEIIPTMCSYVVSPSKIEIKLRKKEGLRWNQLE 368
L E+IP V+ K+EI L++K G W +L+
Sbjct: 274 LWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLK 308
>Z74030-14|CAA98442.1| 198|Caenorhabditis elegans Hypothetical
protein D1054.3 protein.
Length = 198
Score = 41.1 bits (92), Expect = 4e-04
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Frame = +3
Query: 102 KIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEII 281
K +HDW+Q+E+ V +TIL + D V S+ + + + D E +L+ ++
Sbjct: 4 KPRHDWFQSETDVTLTILKRGVPLDDCSVSLSDNN---TLTVKQCD-EILFYGQLSGQVK 59
Query: 282 PTMCSYVVSPSKIEIKLRK-KEGLRWNQL--EGEGTEKKVKAIPQAVIDASGPQQPPQLF 452
+ + +K+E++L K RW L +G+G V++ + + P
Sbjct: 60 KDDLTVKCTAAKVEVRLPKFARNERWASLLKDGQGVAASVQS-----VSPNPESAPTTTV 114
Query: 453 XKDWNKIEK 479
K+W+ IEK
Sbjct: 115 KKNWDAIEK 123
>L16621-13|ABD63202.1| 141|Caenorhabditis elegans Hypothetical
protein ZK688.12 protein.
Length = 141
Score = 30.7 bits (66), Expect = 0.57
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 117 WYQTESQVVVTILIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAH 272
W+ TE+++V+ KN + ++KV ++ P D E S+E+EL H
Sbjct: 33 WFYTEARLVIKNPTKNRYTYKIKVTNND-MFDIRTPKGFIDPETSIEIELLH 83
>AF003140-1|ABR92609.1| 538|Caenorhabditis elegans Hypothetical
protein C44E4.5 protein.
Length = 538
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 51 IMSEEQKNSCVSEEIKPKIKHDWYQTESQVVVTILIKNALS-DQVKVQYSERSL 209
+ SE+ E+++ K++H W QT + + V +K+ +S + VK+ ++ +
Sbjct: 235 LSSEKPHVEGQQEDMEEKVEHSWEQTGNIIQVAFKLKSEISKEDVKIDTTKTGI 288
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +3
Query: 153 LIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEIKL 332
L+ L+ VK+ Y+ + FSC + ++ S ++L + I + ++ PS+I +
Sbjct: 674 LLSPLLAANVKLVYTRTQVLFSCLVADTLSSKEVQLPQSFSKIQDVSVHIEQPSRIPMVP 733
Query: 333 RKKEGLRWNQLEGEGTEK--KVKAIPQAVIDASGP 431
R + ++ G K K A PQ S P
Sbjct: 734 RLDRTMNGDKKNGGARLKNNKYLANPQQGSSKSTP 768
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 28.7 bits (61), Expect = 2.3
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +3
Query: 153 LIKNALSDQVKVQYSERSLSFSCPLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEIKL 332
L+ L+ VK+ Y+ + FSC + ++ S ++L + I + ++ PS+I +
Sbjct: 674 LLSPLLAANVKLVYTRTQVLFSCLVADTLSSKEVQLPQSFSKIQDVSVHIEQPSRIPMVP 733
Query: 333 RKKEGLRWNQLEGEGTEK--KVKAIPQAVIDASGP 431
R + ++ G K K A PQ S P
Sbjct: 734 RLDRTMNGDKKNGGARLKNNKYLANPQQGSSKSTP 768
>Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical
protein C08B11.1 protein.
Length = 799
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -1
Query: 351 LDLPSYVA*SLSSTGSLRNCTLLVLFHVLIQVPNCTRSLS*VTDKKRID 205
LD+ S +S SLRN +L+++++ I + T +LS +T + +D
Sbjct: 188 LDISSTCVTDISCISSLRNLEVLIMYNLNILKGDVTETLSNLTKLRVLD 236
>X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein
protein.
Length = 799
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -1
Query: 351 LDLPSYVA*SLSSTGSLRNCTLLVLFHVLIQVPNCTRSLS*VTDKKRID 205
LD+ S +S SLRN +L+++++ I + T +LS +T + +D
Sbjct: 188 LDISSTCVTDISCISSLRNLEVLIMYNLNILKGDVTETLSNLTKLRVLD 236
>U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical
protein F10G7.5a protein.
Length = 457
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -3
Query: 286 VGIISCANSSSKLYSESE--LGNGQEKDRLRSLYWTLTWSLRAFLINIVTTTCDSVWYQS 113
+G+I ++ E+E +G E ++ W + FL+ ++ TC++VW Q
Sbjct: 212 IGLIFIGQPEGDIHVETENLIGTNSEIRVEQARVWPQLRTT-TFLVLFLSLTCNAVWVQ- 269
Query: 112 CLIFGLISSETQEFFCS 62
L GL + Q+F S
Sbjct: 270 -LTSGLYKAYGQQFIDS 285
>U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical
protein F10G7.5b protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -3
Query: 286 VGIISCANSSSKLYSESE--LGNGQEKDRLRSLYWTLTWSLRAFLINIVTTTCDSVWYQS 113
+G+I ++ E+E +G E ++ W + FL+ ++ TC++VW Q
Sbjct: 226 IGLIFIGQPEGDIHVETENLIGTNSEIRVEQARVWPQLRTT-TFLVLFLSLTCNAVWVQ- 283
Query: 112 CLIFGLISSETQEFFCS 62
L GL + Q+F S
Sbjct: 284 -LTSGLYKAYGQQFIDS 299
>Z98866-18|CAB11555.2| 387|Caenorhabditis elegans Hypothetical
protein Y49E10.21 protein.
Length = 387
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 102 KIKHDWYQTESQVVVTILIKNALSDQVKVQYSER 203
K HDW + SQ++ + K+ L ++K ++ E+
Sbjct: 255 KSSHDWAKNLSQILQKTVEKSNLESELKQEFEEK 288
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = -2
Query: 302 YVTAHCWYYFMC*FKFQTVLGXXXXXRTRKG*TSFTVLDFDLVA*GILD*YSDNHL*LRL 123
+ + WY F C + QTV FT L ++A G LD D+H LR
Sbjct: 660 FTLTNFWYSFFCGYSAQTVFDAVLIACYN---LFFTAL--PVLAMGSLDQDVDDHYSLRY 714
Query: 122 VPIMFDLRLNFFRNTGILLF 63
+ + N F N I ++
Sbjct: 715 PKLYLPGQFNLFFNMRIFIY 734
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/80 (27%), Positives = 32/80 (40%)
Frame = -2
Query: 302 YVTAHCWYYFMC*FKFQTVLGXXXXXRTRKG*TSFTVLDFDLVA*GILD*YSDNHL*LRL 123
+ + WY F C + QTV FT L ++A G LD D+H LR
Sbjct: 831 FTLTNFWYSFFCGYSAQTVFDAVLIACYN---LFFTAL--PVLAMGSLDQDVDDHYSLRY 885
Query: 122 VPIMFDLRLNFFRNTGILLF 63
+ + N F N I ++
Sbjct: 886 PKLYLPGQFNLFFNMRIFIY 905
>U46671-3|AAY86216.1| 133|Caenorhabditis elegans Hypothetical
protein C14E2.7 protein.
Length = 133
Score = 26.6 bits (56), Expect = 9.3
Identities = 24/112 (21%), Positives = 46/112 (41%)
Frame = +3
Query: 42 KP*IMSEEQKNSCVSEEIKPKIKHDWYQTESQVVVTILIKNALSDQVKVQYSERSLSFSC 221
KP + + +K +E PK + W +L+ L + ++ E+ LS+S
Sbjct: 30 KPPLKKKPKKKPETEDEF-PKFDYGWTPVIIFATTCLLVLTTLFNGYIIEDQEKELSYSN 88
Query: 222 PLPNSDSEYSLELELAHEIIPTMCSYVVSPSKIEIKLRKKEGLRWNQLEGEG 377
+ LE + E P+ YVV E++ ++E + ++E G
Sbjct: 89 KM--------LEKGVQEEAQPSYHQYVVDQIDEEMRNIRREEMPPKEMESSG 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,943,505
Number of Sequences: 27780
Number of extensions: 191657
Number of successful extensions: 762
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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