Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C12f
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    29   0.30 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   2.8  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    26   3.7  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   3.7  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    26   3.7  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   4.9  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   8.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   8.5  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -1

Query: 345 FTGYLDISRESSCQYPPWT*TNIRASFGRSVPKISSFCPDVGPYSISSS*GILMTASRLA 166
           FT Y   S ESS  YP  + T + +S+  S  +++S  P     + S+S  +   +S +A
Sbjct: 147 FTSYPATSSESSSSYPASS-TEVASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVA 205

Query: 165 S 163
           S
Sbjct: 206 S 206


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 65   EVLDFEREYSPSRWSPRFSTPEQVLQNHVKLVTEASLDAVIKIPHE 202
            ++++FE E     WS R+ TP++ L++   +  +A L   + + H+
Sbjct: 967  KMMNFE-EIERRLWSGRYCTPKEFLRDIKMIKQDAILSGDVNLKHK 1011


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 266 NDARIFVYVHGGYWQELSREISRYPVKPFYRGGIKXDNYRL 388
           N   + V+  G Y  ++S +I    +KP  R  ++ D+Y+L
Sbjct: 79  NKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQL 119


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +2

Query: 68  VLDFEREYSPSRWSPRFSTPEQVLQNHVKLVTEASLDAVIKIPHELDIEYGPTSGQKLDI 247
           VLD +  Y+P R   R STP +V      +   A+ D  +            TS QK  +
Sbjct: 257 VLDLDNPYNPPRML-RHSTPWEVADTQWNV--HAARDQWVV----------STSSQKTIV 303

Query: 248 FGTDLPNDARIFVYVHG 298
           +   LPND  I   +HG
Sbjct: 304 WNLALPNDRAIEFMLHG 320


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 363 ESKXIIIGYDLCPTVTLGEIIKEIQ 437
           E+  +IIG  L P VTLG ++ + Q
Sbjct: 328 EANKLIIGNGLDPQVTLGPVVSKTQ 352


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 138 NTCSGVENRGDQRLGEYSRSKSKTSSDIVN 49
           N C  + N  +Q++   S   S++S DIVN
Sbjct: 139 NDCQNIANMAEQKVMMVSAIFSESSKDIVN 168


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 428 FDDLSERNRRAQVITYNYRF*FHLDKTVSLDIWIFLGKVPASI-HRGRKRISEHHLEGPF 252
           F+D +E N  AQ +  +YR   ++  T +LD+W   G    +I  R  K + +  LEG  
Sbjct: 527 FND-TENNGHAQWVHPDYRNKEYIRGTETLDVWFDSGTSWTTIAPRKNKPLIDLCLEGSD 585

Query: 251 Q 249
           Q
Sbjct: 586 Q 586


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 125 PEQVLQNHVKLVTEASLDAV 184
           PE+VLQ    ++T  SLD V
Sbjct: 694 PERVLQQSTSVITNGSLDEV 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,614
Number of Sequences: 5004
Number of extensions: 46489
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)