Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C12f
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical pr...    45   3e-05
AL021488-6|CAA16366.2|  272|Caenorhabditis elegans Hypothetical ...    41   6e-04
AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical...    30   1.1  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      29   1.9  
AC087081-14|AAK66032.1|  250|Caenorhabditis elegans Hypothetical...    28   3.3  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    28   4.4  
Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical p...    27   5.8  
U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF039050-7|ABC71842.1|  516|Caenorhabditis elegans Cytochrome p4...    27   7.7  
AF039050-6|AAC47939.2|  499|Caenorhabditis elegans Cytochrome p4...    27   7.7  

>U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical
           protein D2024.2 protein.
          Length = 271

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +2

Query: 89  YSPSRWSPRFSTPEQVLQNHVKLVTEA--SLDAVIKIPHELDIEYGPTSGQKLDIFGTDL 262
           YSPS W P     ++V+ +    +  A  +L    KIP + ++ YG    QK+DI+G D 
Sbjct: 8   YSPSCWVPG-KNRDEVMNDFFAGIKNAFEALKNDEKIPRKENVAYGMEENQKVDIWG-DA 65

Query: 263 PNDARIFVYVHGGYWQELSREISRYPVK 346
            +  ++ +++HGGYW   +R+    P +
Sbjct: 66  SD--KLLIFIHGGYWAAGTRKDCLTPAR 91


>AL021488-6|CAA16366.2|  272|Caenorhabditis elegans Hypothetical
           protein Y45F10A.3 protein.
          Length = 272

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
 Frame = +2

Query: 56  MSEEVLDFEREYSPSRWSPRFSTPEQVLQNHVKLVTEASLDAVIKIPHELDIEYGPTSGQ 235
           MSE  +D   EYS S+ S    T  +     V+ + E   ++ I+   + DI Y P    
Sbjct: 1   MSE--IDLTSEYSCSKHSKNPETAGEEFDVKVEKIYEDLKNSSIE--RQEDIPYFPNGEM 56

Query: 236 -KLDIFGTDLPNDARIFVYVHGGYWQELSREISRYPVKPFYRGGIKXDNYRL*PVPYGYA 412
            ++DI+G +     ++F+ +HGGYW   +R+     V    + G     Y +  V Y YA
Sbjct: 57  TRIDIWGPETAE--KVFIMIHGGYWLIGNRKKCLAVVHVAQKLG-----YTVVSVGYDYA 109

Query: 413 RRDH 424
            +DH
Sbjct: 110 NKDH 113


>AF039046-11|AAD34651.3|  388|Caenorhabditis elegans Hypothetical
           protein R09B5.12 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 68  VLDFEREYSPSRWSPRFSTPEQVLQNHVKLVTEASLDAVIKI 193
           V+  E ++   +W P   T E +LQN+ KL  E   + + ++
Sbjct: 30  VVSAEFDFKDLKWQPDLITKESILQNNGKLTVEPLFEGMTQL 71


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical
           protein K04G2.8b protein.
          Length = 1188

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 186 LKYLMNWI*NMDPHLDRNSIFLERTFQMMLGYSFTSTVDT 305
           LKY+  ++ N   HL+  S+ + R   ++   SFT   +T
Sbjct: 340 LKYVSQYLANTSTHLELRSLLITRMLTLLKSASFTCVTNT 379


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical
           protein K04G2.8a protein.
          Length = 1186

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 186 LKYLMNWI*NMDPHLDRNSIFLERTFQMMLGYSFTSTVDT 305
           LKY+  ++ N   HL+  S+ + R   ++   SFT   +T
Sbjct: 340 LKYVSQYLANTSTHLELRSLLITRMLTLLKSASFTCVTNT 379


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 186 LKYLMNWI*NMDPHLDRNSIFLERTFQMMLGYSFTSTVDT 305
           LKY+  ++ N   HL+  S+ + R   ++   SFT   +T
Sbjct: 340 LKYVSQYLANTSTHLELRSLLITRMLTLLKSASFTCVTNT 379


>AC087081-14|AAK66032.1|  250|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.5 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 393 LCPTVTLGEIIKEIQNAAKYVFEYAEKMT 479
           LCP ++L  ++ E ++  KY F    K+T
Sbjct: 113 LCPPISLANVLLESESPIKYTFPKTTKLT 141


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = -2

Query: 473 FFSVFEDVFSSILYLFD-DLSERNRRAQVITYNYRF*FHLDKTVSLDIWIFLGKVPASIH 297
           FF +F  +FSS++ +F+    E+ ++  ++ +  RF F  D    + + IFL  + A+  
Sbjct: 16  FFGIFFAIFSSLMNIFNLKKIEKKKKNDMVLFYSRFIF--DAFYGITVTIFLSLMIAANF 73

Query: 296 RGRKRISEHHLEGPFQKYRVSVQMWV 219
              + I+   L      + V +   V
Sbjct: 74  NNLETINHFTLLSGLLVWNVGISQAV 99


>Z82054-4|CAB04842.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 367 DSTSIKRFHWISGYFSGKFLPVSTVDVNEYP 275
           +S  IK F W +GYF     P  T+   + P
Sbjct: 341 ESRRIKAFKWFNGYFGSPVGPEHTLSCGKMP 371


>Z82054-1|CAB04840.1|  453|Caenorhabditis elegans Hypothetical
           protein T26F2.1 protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 367 DSTSIKRFHWISGYFSGKFLPVSTVDVNEYP 275
           +S  IK F W +GYF     P  T+   + P
Sbjct: 341 ESRRIKAFKWFNGYFGSPVGPEHTLSCGKMP 371


>Z81109-18|CAB03255.1|  453|Caenorhabditis elegans Hypothetical
           protein R10D12.15 protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 367 DSTSIKRFHWISGYFSGKFLPVSTVDVNEYP 275
           +S  IK F W +GYF     P  T+   + P
Sbjct: 341 ESRRIKAFKWFNGYFGSPVGPEHTLSCGKMP 371


>U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical
           protein C33D12.2 protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 348 RFIEVESKXIIIGYDLCPTVTLGEIIKEI 434
           R +E E K  I  Y+LC  +TL +II+EI
Sbjct: 447 RLVEQEDKDPI--YELCGLITLEDIIEEI 473


>AF039050-7|ABC71842.1|  516|Caenorhabditis elegans Cytochrome p450
           family protein34A9, isoform b protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 191 IPHELDIEYGPTSGQKLDIFGTDLPNDARIFVYVHGGYWQELSR 322
           + HE  ++   T G +    G D   + R  +  +G +WQE  R
Sbjct: 83  VAHETHVKRANTFGHRFSNGGMDYIREGRGIIASNGEFWQEHRR 126


>AF039050-6|AAC47939.2|  499|Caenorhabditis elegans Cytochrome p450
           family protein34A9, isoform a protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 191 IPHELDIEYGPTSGQKLDIFGTDLPNDARIFVYVHGGYWQELSR 322
           + HE  ++   T G +    G D   + R  +  +G +WQE  R
Sbjct: 83  VAHETHVKRANTFGHRFSNGGMDYIREGRGIIASNGEFWQEHRR 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,860
Number of Sequences: 27780
Number of extensions: 245491
Number of successful extensions: 675
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)