Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 50 3e-07
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 46 3e-06
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 44 2e-05
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 33 0.026
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 31 0.10
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 30 0.24
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 28 0.73
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 1.3
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 26 3.0
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 3.0
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 3.9
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 6.8
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 6.8
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 49.6 bits (113), Expect = 3e-07
Identities = 32/84 (38%), Positives = 43/84 (51%)
Frame = +1
Query: 103 TWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGILAAKCGALVTLTDSLTLPRSLRHL 282
TW + LA Y++ Q G+RVLELG GTGL IL AK G++V TD T +
Sbjct: 152 TWEAGMALAEYIY-QHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDGDT------KV 204
Query: 283 SACCEANGLVPNRDLQIVGLTWGL 354
N + N D+ + L WG+
Sbjct: 205 CDGVRENARLNNCDINVKKLLWGV 228
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 46.0 bits (104), Expect = 3e-06
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = +1
Query: 91 YSFYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGILAAKCGALVTLTDSLTLPRS 270
++ Y W S LA Y+ +R +VLELG G GLP I++A GA ++ P
Sbjct: 53 WAHYLWNSGIELANYIDKNPDTVRAKKVLELGAGAGLPSIVSAFDGAKFVVSTDYPDPAL 112
Query: 271 LRHLSACCEANGLVPNRDLQIVGLTWGLFLGDL------HNLRPVDLILASDCFYEPSQF 432
+ +L + + ++ + VG WG + ++ + D++L SD + ++
Sbjct: 113 IDNLEHNVKQYAEIASK-ISAVGYLWGSNIKEVMSNAGFKDNEVFDILLLSDLVFNHTEH 171
Query: 433 EEVLSTVAYLLEG 471
+++ + +EG
Sbjct: 172 SKLIKSCKMAIEG 184
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 43.6 bits (98), Expect = 2e-05
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Frame = +1
Query: 97 FYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGILAA-KCGALVTLTDSLTLPRSL 273
F TW SAPLL+ L + LELG GTGL GI AA + G V TD LP +
Sbjct: 114 FKTWGSAPLLSANLPKWEDLSNSINALELGAGTGLVGISAAIQLGWQVVCTD---LPDIV 170
Query: 274 RHLSACCEANGLVPNRDLQIVG---LTWGLFLGDLHN----LRPVDLILASDCFYEPSQF 432
++ + N + + V L W D + ++P I+ASDC YE + F
Sbjct: 171 ENMQYNVDYNSELIQQYAGSVSCHVLDWMNPPDDDNRPSWLIKPFQRIIASDCIYE-THF 229
Query: 433 EEVLSTVAYLLEGTDARFLCSYQERST 513
E+ + D + Y R T
Sbjct: 230 GELAIALFRKYLAKDGIVITEYPLRET 256
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -1
Query: 521 DQSVLRSW*EHKKRASVPSSRYATVDNTSSNCDGS*KQSDARIRSTGRK 375
+ + L SW H KR S+ Y ++TSS DGS K +D I T R+
Sbjct: 19 ESNSLLSWQLHVKRKSIKFDIYHKKNDTSSLLDGSNKNTDRSILHTKRQ 67
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 151 RHI-RGLRVLELGCGTGLPGILAAKCGA 231
+HI G VL++GCGTG+ + AK GA
Sbjct: 251 KHIFAGKTVLDVGCGTGILSMFCAKAGA 278
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 328 QIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLE 468
+++ WG F+G+L N R VD ++ + + +E + T + LL+
Sbjct: 655 EVIETHWGKFMGELENARTVDNLMQEHIDFLDTCLKECMLTNSRLLK 701
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 145 QRRHI-RGLRVLELGCGTGLPGILAAKCGA 231
Q H+ R VL++GCGTG+ + A+ GA
Sbjct: 48 QNPHLFRDKIVLDVGCGTGILSMFCARAGA 77
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 108 AICASASLVLVDAKATYSRSESVGVRVRNRTAGNTSREVRSARNPDRQSNITEIASS 278
A+ A S + A + ES+ V NR G + A+ D SN+T +ASS
Sbjct: 29 AVAARGSKIAQSATNDHRNVESIKVVPENRVRGGVA-----AKATDSSSNVTSLASS 80
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 47 VNIWRLLSRSYCQPVIRFTRG 109
VN +RLL R + QPV+ T G
Sbjct: 39 VNAFRLLMRRFAQPVVIITSG 59
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 201 AGNTSREVRSARNPDRQSNITEIASSPFCL 290
AGNT+ S N + ++N+T AS P L
Sbjct: 84 AGNTNTPTTSNSNQNLENNVTSAASMPAIL 113
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -1
Query: 206 PGSPVPHPNSNTLRPRICRLC-VHKYQAS 123
PG P+P P RP L + KYQ S
Sbjct: 10 PGDPIPRPRKKRYRPGTTALREIRKYQRS 38
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 242 RVTSAPHFAASIPGSPVPHPNSNTLRPRICRLCVHKY 132
++ S+P +++P P+P+S P I R+ K+
Sbjct: 65 QIDSSPKIPSAVPHISTPNPSSGASTPNIKRVSDFKF 101
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 206 PGSPVPHPNSNTLRPR 159
P +P PNSNTL PR
Sbjct: 427 PAAPGAFPNSNTLPPR 442
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 248 SVRVTSAPHFAASIPGSPVPHPNSNTLRPRI 156
S R + AP A S GSPV N RP I
Sbjct: 719 SRRPSRAPSAAVSSEGSPVEEDNEAQHRPNI 749
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,849
Number of Sequences: 5004
Number of extensions: 42183
Number of successful extensions: 155
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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