Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 65 3e-11
CU457741-20|CAO82033.1| 206|Caenorhabditis elegans Hypothetical... 53 1e-07
CU457741-19|CAM36356.1| 167|Caenorhabditis elegans Hypothetical... 48 4e-06
Z12017-8|CAA78050.3| 371|Caenorhabditis elegans Hypothetical pr... 35 0.031
Z66514-2|CAA91342.1| 229|Caenorhabditis elegans Hypothetical pr... 35 0.041
Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical pr... 34 0.071
AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical... 34 0.071
U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z81581-9|CAN86610.1| 307|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81486-8|CAB03990.2| 338|Caenorhabditis elegans Hypothetical pr... 27 6.2
U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 27 8.1
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 65.3 bits (152), Expect = 3e-11
Identities = 50/148 (33%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Frame = +1
Query: 100 YTWPSAPLLAWYLWTQRRHIRGLRVLELGCG-TGLPGILAAKCGAL-VTLTDSLTLPRSL 273
+ WP A + + +L + + I VLE+G G TG+ G+ AK GA V +TD L +L
Sbjct: 11 HAWPCAQVFSDFLCSNQELIEDKLVLEIGAGATGVCGLTTAKLGAANVWMTDHPKLEAAL 70
Query: 274 RHLSACCEANGLVPNRDLQIVGLTWGLFLG-----DLHNLRPVDLILASDCFYEPSQFEE 438
L EANG+ + GL W D R +D+I+ASD F++PS F
Sbjct: 71 ETLQRNIEANGVAEK--CIVTGLDWESRASVSAVCDQIGDRHLDVIIASDVFFDPSTFCP 128
Query: 439 VLSTVAYLL-EGTDARFLCSYQERSTDW 519
++ T A LL + A +YQ R +W
Sbjct: 129 LIDTFAQLLIKFEHATIWFAYQLRDDNW 156
>CU457741-20|CAO82033.1| 206|Caenorhabditis elegans Hypothetical
protein C42C1.13b protein.
Length = 206
Score = 53.2 bits (122), Expect = 1e-07
Identities = 41/126 (32%), Positives = 60/126 (47%)
Frame = +1
Query: 106 WPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGILAAKCGALVTLTDSLTLPRSLRHLS 285
W SA + Y + + G +VLELG GTG+ GI A GA V +TD LP L +
Sbjct: 35 WDSALMTIHYFFKYPKPFEGKKVLELGSGTGVGGIALAALGADVIITD---LPERLALIE 91
Query: 286 ACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLL 465
EAN + +++ L W D +D++LA DC Y S + +++ LL
Sbjct: 92 KNVEANRKLTGNRIKVQVLDW---TKD-RIPEGLDMVLAIDCVYYNSTIDPLIT----LL 143
Query: 466 EGTDAR 483
DA+
Sbjct: 144 NDCDAK 149
>CU457741-19|CAM36356.1| 167|Caenorhabditis elegans Hypothetical
protein C42C1.13a protein.
Length = 167
Score = 48.0 bits (109), Expect = 4e-06
Identities = 38/117 (32%), Positives = 56/117 (47%)
Frame = +1
Query: 133 YLWTQRRHIRGLRVLELGCGTGLPGILAAKCGALVTLTDSLTLPRSLRHLSACCEANGLV 312
Y + + G +VLELG GTG+ GI A GA V +TD LP L + EAN +
Sbjct: 5 YFFKYPKPFEGKKVLELGSGTGVGGIALAALGADVIITD---LPERLALIEKNVEANRKL 61
Query: 313 PNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYEPSQFEEVLSTVAYLLEGTDAR 483
+++ L W D +D++LA DC Y S + +++ LL DA+
Sbjct: 62 TGNRIKVQVLDW---TKD-RIPEGLDMVLAIDCVYYNSTIDPLIT----LLNDCDAK 110
>Z12017-8|CAA78050.3| 371|Caenorhabditis elegans Hypothetical
protein R08D7.4 protein.
Length = 371
Score = 35.1 bits (77), Expect = 0.031
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Frame = +1
Query: 169 RVLELGCGTGLPGILAAKCG-ALVTLTD------SLTLPRSLRHLSACCEANGLVPNRDL 327
R+LELG G G+ GI AK VTLTD +L ++ + N
Sbjct: 188 RILELGSGCGVSGIAIAKMNDCCVTLTDYDDNVLNLLEENIAKNDLKSDTEDSSANNNQA 247
Query: 328 QIVGLTWGLFLGDLHNLR-PVDLILASDCFYEPSQFEEVLSTVAYLLEGTDARFL-CSYQ 501
+ L W F D + P DLI+A+D Y+ + + + + LL + A + C+ +
Sbjct: 248 TVRSLNWCDF--DFSEWKEPTDLIIAADVVYDTALLASLCNVLNLLLRHSKAAIVACTRR 305
Query: 502 ERST 513
S+
Sbjct: 306 NESS 309
>Z66514-2|CAA91342.1| 229|Caenorhabditis elegans Hypothetical
protein K01A11.2 protein.
Length = 229
Score = 34.7 bits (76), Expect = 0.041
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = +1
Query: 97 FYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGILAAKCGA 231
F W L Y+ + G VLELGCG LP IL A GA
Sbjct: 54 FKIWECTVDLCDYIEENQTLFAGKSVLELGCGAALPSILTAVHGA 98
>Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 33.9 bits (74), Expect = 0.071
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Frame = +1
Query: 106 WPSAPLLAWYLWTQRRHIRG-----------LRVLELGCG-TGLPGILAAKC---GALVT 240
WP + LAW + I G R+LELG G GL IL A C + V
Sbjct: 163 WPGSEALAWTILRDPNKILGPSLGDGDGGGHRRILELGAGFLGLSSILIA-CKVPDSSVW 221
Query: 241 LTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYE 420
+TD S+R L +N + +R + L WG +L D ILA+DC +
Sbjct: 222 VTDGNM--ESVRSLEKIRNSNSSL-DRCCHVRQLIWGA--QELQQQHTFDTILAADCVFF 276
Query: 421 PSQFEEVLSTVAYLLEGTDARFLCSYQERST 513
E ++ + L + L S + + +
Sbjct: 277 SEHHESLMKCIHSHLRPSGRAILSSPRRKQS 307
>AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 33.9 bits (74), Expect = 0.071
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Frame = +1
Query: 106 WPSAPLLAWYLWTQRRHIRG-----------LRVLELGCG-TGLPGILAAKC---GALVT 240
WP + LAW + I G R+LELG G GL IL A C + V
Sbjct: 163 WPGSEALAWTILRDPNKILGPSLGDGDGGGHRRILELGAGFLGLSSILIA-CKVPDSSVW 221
Query: 241 LTDSLTLPRSLRHLSACCEANGLVPNRDLQIVGLTWGLFLGDLHNLRPVDLILASDCFYE 420
+TD S+R L +N + +R + L WG +L D ILA+DC +
Sbjct: 222 VTDGNM--ESVRSLEKIRNSNSSL-DRCCHVRQLIWGA--QELQQQHTFDTILAADCVFF 276
Query: 421 PSQFEEVLSTVAYLLEGTDARFLCSYQERST 513
E ++ + L + L S + + +
Sbjct: 277 SEHHESLMKCIHSHLRPSGRAILSSPRRKQS 307
>U97194-6|AAB52451.2| 244|Caenorhabditis elegans Hypothetical
protein C37A2.6 protein.
Length = 244
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 91 YSFYTWPSAPLLAWYLWTQRRHIRGLRVLELGCGTGLPGILAAKCGALVTLTDSL 255
++FY WP L+ ++ + +G +++ G G G I A+ CGA L + +
Sbjct: 54 WAFY-WPGGQGLSRFILDNKPLFQGSEIVDFGAGCGSASISASICGAKKILANDI 107
>Z81581-9|CAN86610.1| 307|Caenorhabditis elegans Hypothetical
protein T02E1.5a protein.
Length = 307
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 139 WTQRRHIRGLRVLELGCGTGLPGILAAKCGAL 234
W R+ +RG VL G G+GL ++A + G L
Sbjct: 31 WLLRKDVRGQTVLITGSGSGLGRLMAFEFGKL 62
>Z81486-8|CAB03990.2| 338|Caenorhabditis elegans Hypothetical
protein C53A5.10 protein.
Length = 338
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 511 CCVPGKNTKNARQCLQADTLQLIILLRTVMARKSNLTQESDLQDVSYVDHP 359
CC G TKN + Q + L I ++ M N + ++YV+ P
Sbjct: 222 CCALGAKTKNTKTSSQTRKMSLQIFFQSAMICAVNFSASMIYVIMNYVEVP 272
>U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical
protein F43C9.3 protein.
Length = 798
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = -1
Query: 212 SIPGSPVPHPNSNTLRPRICRLCVHKYQASRGADGHV*NE*PADNNSGITISKYSPRVSP 33
S +P+PHP + PR +A + H+ E +N ++++ S +P
Sbjct: 87 SCAATPIPHPEQPIIPPRSNSNLSKFNKALSMSTSHLTQEIEEISNKRLSMALPSSSAAP 146
Query: 32 FVEDLAR 12
F+ L R
Sbjct: 147 FITSLKR 153
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 494 EHKKRASVPSSRYATVDNTSSNCDGS*KQSDARIRSTGRKLCRSPKNK 351
E KKRA SS ++ +SS+ S + S+GR RSP+ +
Sbjct: 6 ETKKRARSSSSSSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRR 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,823
Number of Sequences: 27780
Number of extensions: 243840
Number of successful extensions: 818
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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