Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.36 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 353 CFWVIYITY 379
           C+WVIY+TY
Sbjct: 486 CYWVIYVTY 494


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 488 KKRASVPSSRYATVDNT-SSNCD 423
           K+R  +  ++YA  +NT SS CD
Sbjct: 112 KRRVGIVENQYAVENNTGSSLCD 134


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
          D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 2  SLYSAQDPLQTATLEVNIWRL 64
          S YSA  P Q  + E ++W L
Sbjct: 21 SFYSASYPPQNRSQEEDLWNL 41


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -2

Query: 130 KLAEAQMA-TCKTNNRLTITPG*QSPNIHLECRRL 29
           K  E Q A +C     +  TPG  S  I L CR +
Sbjct: 360 KEEELQEAPSCGGGPTILTTPGLDSDGIRLPCREV 394


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 210 TSREVRSARNPDRQSNITEIASSPF 284
           TS+ +    NP+   N+  I ++PF
Sbjct: 305 TSKPLPMVDNPESTGNLVYIYNNPF 329


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 69  PGVIVSRLFVLHVAICASASLVLV 140
           P VI+    V+HVA   S SLV V
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCV 260


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 69  PGVIVSRLFVLHVAICASASLVLV 140
           P VI+    V+HVA   S SLV V
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCV 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,895
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)