Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   2.2  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   2.2  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    25   5.2  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   5.2  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   6.8  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.8  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    25   9.0  

>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 9   LERLGQYLQNQELTILPEDED-NTWHKFLQDNACFLKDNDTF 131
           +++L QYL N+EL    +D D N +H   Q ++  LK N  F
Sbjct: 7   IKKLNQYLDNRELAFRAKDGDKNIFHTESQLDSS-LKKNTAF 47


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 39  QELTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQAHLIEAVTKVFDVV 218
           Q  T  P D D   + F +D+   +K  DTF  M+ F+ +   Q+    +E +   FD  
Sbjct: 124 QNRTAKPNDNDGDDYSFFEDDLPVIK--DTF--MRGFQSFK--QRSMEWVENIASKFDGE 177

Query: 219 HKD 227
            +D
Sbjct: 178 EED 180


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 6   NLERLGQYLQNQELTILPEDEDNT-WHKFLQ--DNACFLKDNDTFFSMKDFKKYSL 164
           N   L + L    +++LP+D D T  HK+L    N   L  +  F S++D K  ++
Sbjct: 90  NFRNLLKSLSKSNVSVLPDDSDATHLHKWLLKFQNMLTLLMSRAFHSIQDEKNINI 145


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -2

Query: 376 FPFDISKKADINRLFVSSKTCETL-KLLCRFLFS*SSWHL--ILHNTEKY 236
           F +  SKK ++ +   S +  E   KL C F F    WHL  IL++  KY
Sbjct: 29  FKYKESKKINVYKRKKSDEVVEDCNKLKCTF-FMIEEWHLLAILYDKSKY 77


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 370 FDISKKADINRLFVSSKTCETLKLLCRFLFS*SSWHLILHNTEKYFP 230
           F +  K  +NRL+ S  T + L  L   LF+   W L +      FP
Sbjct: 637 FKVYLKTTLNRLYNSKLTRKVLYYLFSPLFTLELWKLRVRGALSKFP 683


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/33 (27%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +3

Query: 297 NSLRVSQVFD--DTNKRLMSAFLDISNGKEGIY 389
           +S++  + +D  D N+R+++  ++ +NG  G+Y
Sbjct: 380 DSVKTRRAYDANDPNRRILARDIEAANGGAGVY 412


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 12  ERLGQYLQNQELTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQ 176
           +RL ++L+N + TIL  D         +D     ++N+T   +K  KK   +++Q
Sbjct: 179 QRLAEHLENSKKTILQHDNKE------EDKEIHSEENETKDEIKSEKKEPEIKKQ 227


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 435 MKCYFSSYLVQNGTDD 482
           M CYF++YL     DD
Sbjct: 156 MSCYFTAYLAMESVDD 171


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 162 LVQQQAHLIEAVTKVFDVVHKDTGKYFSVLCNIRCHEDQLNKNLHN 299
           L++ ++   +   + F+   +DT  +  VL + R HE+QL   L N
Sbjct: 6   LLKTKSQPFDPYVEAFEKYGRDTA-FIPVLRHKRVHEEQLRDKLKN 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,960
Number of Sequences: 5004
Number of extensions: 42773
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)