Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    30   0.98 
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    28   4.0  
02_05_1285 - 35452249-35452604,35452702-35452789,35452908-354535...    28   4.0  
02_05_1288 + 35466544-35466579,35466691-35467590,35467695-35468231     28   5.2  
02_04_0228 - 21083917-21084067,21084489-21084577,21084662-210847...    27   6.9  

>02_03_0074 + 14781763-14784191,14784888-14784978,14785180-14785230,
            14785882-14785947,14786509-14786610
          Length = 912

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 240  FSVLCNIRCHEDQLNKNL-HNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFL 395
            FS LC+    +      + HN++ + QV DD+NKR  S +      KEG++ +
Sbjct: 851  FSALCDHASSQRTEEMIIGHNAVSIQQVMDDSNKRKPSPY---KGKKEGVFVM 900


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 402 NIKERSCNIAXMKCYFSSYLVQNG 473
           ++ +R C  A MK YF S+L  NG
Sbjct: 103 DVPQRVCTAAEMKFYFESFLDSNG 126


>02_05_1285 -
           35452249-35452604,35452702-35452789,35452908-35453588,
           35453639-35453749,35454012-35454047
          Length = 423

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 327 HQRLVKLSNYCAGFYSVDLRGI 262
           H RLV+L  Y AGF+ VDL+ +
Sbjct: 190 HPRLVELDIYDAGFHLVDLKSL 211


>02_05_1288 + 35466544-35466579,35466691-35467590,35467695-35468231
          Length = 490

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 24  QYLQNQELTILPEDEDNTWHKFLQDNACFLKD 119
           Q LQ   L  LPE  D TW +F  + A FLK+
Sbjct: 328 QNLQVLNLEDLPEGCDITWTRFFLEAAPFLKE 359


>02_04_0228 -
           21083917-21084067,21084489-21084577,21084662-21084731,
           21084747-21084823,21084954-21085337,21085420-21085760,
           21085869-21085950,21086033-21086391,21087084-21087204,
           21087427-21087512,21088896-21088944,21089262-21089275,
           21089467-21089545
          Length = 633

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 168 QQQAHLIEAVTKVFDVVHKDTGKYFSVL 251
           +  A L+E  T +F ++ KD G YF++L
Sbjct: 342 ESNALLVEIHTAIFHLLIKDEGDYFTIL 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,458
Number of Sequences: 37544
Number of extensions: 215841
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)