Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C08f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC059383-1|AAH59383.1| 808|Homo sapiens anaphase promoting comp... 44 4e-04
AF191338-1|AAF05752.1| 808|Homo sapiens anaphase-promoting comp... 44 4e-04
AL353932-1|CAB89245.1| 118|Homo sapiens hypothetical protein pr... 41 0.002
BC067120-1|AAH67120.1| 754|Homo sapiens protein tyrosine phosph... 31 3.2
AY171233-1|AAO13168.1| 754|Homo sapiens protein tyrosine phosph... 31 3.2
AL360020-3|CAI14621.2| 806|Homo sapiens protein tyrosine phosph... 31 3.2
AL360020-2|CAM20720.1| 754|Homo sapiens protein tyrosine phosph... 31 3.2
AK094773-1|BAC04421.1| 140|Homo sapiens protein ( Homo sapiens ... 31 3.2
AK094631-1|BAC04391.1| 394|Homo sapiens protein ( Homo sapiens ... 31 3.2
BC052970-1|AAH52970.1| 585|Homo sapiens YTH domain family, memb... 30 5.7
AK093081-1|BAC04046.1| 534|Homo sapiens protein ( Homo sapiens ... 30 5.7
AK056219-1|BAB71122.1| 543|Homo sapiens protein ( Homo sapiens ... 30 5.7
>BC059383-1|AAH59383.1| 808|Homo sapiens anaphase promoting complex
subunit 4 protein.
Length = 808
Score = 43.6 bits (98), Expect = 4e-04
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +3
Query: 3 FNLERLGQYLQNQ--ELTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQ 176
FN+ER+GQYL+++ +L P E N W+ FLQ N+ LK++ F K V+++
Sbjct: 470 FNVERVGQYLKDEDDDLVSPPNTEGNQWYDFLQ-NSSHLKESPLLFPYYPRKSLHFVKRR 528
Query: 177 AHLI--EAVTKVFDVVHK 224
I + + K DV+ K
Sbjct: 529 MENIIDQCLQKPADVIGK 546
>AF191338-1|AAF05752.1| 808|Homo sapiens anaphase-promoting complex
subunit 4 protein.
Length = 808
Score = 43.6 bits (98), Expect = 4e-04
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +3
Query: 3 FNLERLGQYLQNQ--ELTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQ 176
FN+ER+GQYL+++ +L P E N W+ FLQ N+ LK++ F K V+++
Sbjct: 470 FNVERVGQYLKDEDDDLVSPPNTEGNQWYDFLQ-NSSHLKESPLLFPYYPRKSLHFVKRR 528
Query: 177 AHLI--EAVTKVFDVVHK 224
I + + K DV+ K
Sbjct: 529 MENIIDQCLQKPADVIGK 546
>AL353932-1|CAB89245.1| 118|Homo sapiens hypothetical protein
protein.
Length = 118
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 3 FNLERLGQYLQNQ--ELTILPEDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYSLVQQQ 176
FN+ER+GQYL+++ +L P E N W+ FLQ N+ LK++ F K V+++
Sbjct: 37 FNVERVGQYLKDEDDDLVSPPNTEGNQWYDFLQ-NSSHLKESPLLFPYYPRKSLHFVKRR 95
>BC067120-1|AAH67120.1| 754|Homo sapiens protein tyrosine
phosphatase domain containing 1 protein.
Length = 754
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -1
Query: 362 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 237
++KG+HQ+ +CV+ + N QTI V ++ F+A I + K+
Sbjct: 677 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 717
>AY171233-1|AAO13168.1| 754|Homo sapiens protein tyrosine
phosphatase protein.
Length = 754
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -1
Query: 362 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 237
++KG+HQ+ +CV+ + N QTI V ++ F+A I + K+
Sbjct: 677 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 717
>AL360020-3|CAI14621.2| 806|Homo sapiens protein tyrosine
phosphatase domain containing 1 protein.
Length = 806
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -1
Query: 362 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 237
++KG+HQ+ +CV+ + N QTI V ++ F+A I + K+
Sbjct: 729 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 769
>AL360020-2|CAM20720.1| 754|Homo sapiens protein tyrosine
phosphatase domain containing 1 protein.
Length = 754
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -1
Query: 362 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 237
++KG+HQ+ +CV+ + N QTI V ++ F+A I + K+
Sbjct: 677 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 717
>AK094773-1|BAC04421.1| 140|Homo sapiens protein ( Homo sapiens
cDNA FLJ37454 fis, clone BRAWH2011066. ).
Length = 140
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -1
Query: 362 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 237
++KG+HQ+ +CV+ + N QTI V ++ F+A I + K+
Sbjct: 63 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 103
>AK094631-1|BAC04391.1| 394|Homo sapiens protein ( Homo sapiens
cDNA FLJ37312 fis, clone BRAMY2016892. ).
Length = 394
Score = 30.7 bits (66), Expect = 3.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = -1
Query: 362 IQKGRHQSFICVIKDL*NSQTIVQVFIQLIFVASNIT*YRKI 237
++KG+HQ+ +CV+ + N QTI V ++ F+A I + K+
Sbjct: 317 LEKGQHQTILCVLHCIVNLQTI-PVDVEEAFLAHAIKAFTKV 357
>BC052970-1|AAH52970.1| 585|Homo sapiens YTH domain family, member
3 protein.
Length = 585
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 270 EDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFL-AVNIKERSCNIAXMK 440
ED +++++ S+ S + NKRL +A+ + NGK +Y L +VN C +A MK
Sbjct: 426 EDDIHRSIKYSIWCST--EHGNKRLDAAYRSL-NGKGPLYLLFSVNGSGHFCGVAEMK 480
>AK093081-1|BAC04046.1| 534|Homo sapiens protein ( Homo sapiens
cDNA FLJ35762 fis, clone TESTI2004793, moderately
similar to Homo sapiens NY-REN-2 antigen mRNA. ).
Length = 534
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 270 EDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFL-AVNIKERSCNIAXMK 440
ED +++++ S+ S + NKRL +A+ + NGK +Y L +VN C +A MK
Sbjct: 375 EDDIHRSIKYSIWCST--EHGNKRLDAAYRSL-NGKGPLYLLFSVNGSGHFCGVAEMK 429
>AK056219-1|BAB71122.1| 543|Homo sapiens protein ( Homo sapiens
cDNA FLJ31657 fis, clone NT2RI2004304, moderately
similar to Homo sapiens NY-REN-2 antigen mRNA. ).
Length = 543
Score = 29.9 bits (64), Expect = 5.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 270 EDQLNKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFL-AVNIKERSCNIAXMK 440
ED +++++ S+ S + NKRL +A+ + NGK +Y L +VN C +A MK
Sbjct: 426 EDDIHRSIKYSIWCST--EHGNKRLDAAYRSL-NGKGPLYLLFSVNGSGHFCGVAEMK 480
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,343,860
Number of Sequences: 237096
Number of extensions: 1221874
Number of successful extensions: 2309
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2306
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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