Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-5|AAV58881.1|  527|Caenorhabditis elegans Neurabin protei...    31   0.38 
U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protei...    31   0.38 
U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protei...    31   0.38 
U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protei...    31   0.38 
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    30   1.2  
AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    30   1.2  
U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF099918-4|AAN63402.1|  243|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    28   4.7  
AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U80437-5|AAV58881.1|  527|Caenorhabditis elegans Neurabin protein
           1, isoform e protein.
          Length = 527

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 IEAVTKVFDVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 350
           I A+    DV HK   +Y  VL + + H DQL K    +  + + + +  K L++
Sbjct: 222 IAALELELDVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 276


>U80437-3|AAK68243.1|  561|Caenorhabditis elegans Neurabin protein
           1, isoform b protein.
          Length = 561

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 IEAVTKVFDVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 350
           I A+    DV HK   +Y  VL + + H DQL K    +  + + + +  K L++
Sbjct: 256 IAALELELDVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 310


>U80437-2|AAL16317.1|  658|Caenorhabditis elegans Neurabin protein
           1, isoform d protein.
          Length = 658

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 IEAVTKVFDVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 350
           I A+    DV HK   +Y  VL + + H DQL K    +  + + + +  K L++
Sbjct: 353 IAALELELDVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 407


>U80437-1|AAB37620.1|  721|Caenorhabditis elegans Neurabin protein
           1, isoform a protein.
          Length = 721

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 186 IEAVTKVFDVVHKDTGKYFSVLCNIRCHEDQLNKNLHNSLRVSQVFDDTNKRLMS 350
           I A+    DV HK   +Y  VL + + H DQL K    +  + + + +  K L++
Sbjct: 416 IAALELELDVTHKKAEQYHEVLSSTKSHCDQLEKQNEQANYMIKNYQEREKELLN 470


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 489 FXDHQCHFELNKKKSSISXLQYYKISPLY*QPKNKFLLFHLIYPK 355
           F D Q H   N+KK  I  L+YY+I+    +P    LL  L + K
Sbjct: 36  FADMQNHNTQNEKKGIIRYLEYYEINSQSTRPYPNLLLNKLSFSK 80


>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/114 (20%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
 Frame = +3

Query: 36  NQELTILPEDEDNTWHKFLQDNACFLKDND---TFFSMKDFKKYSLVQQQAHLIEAVTKV 206
           N+++    E+ D+  H  + D    L  ++   TF + +    Y+  ++Q H++  + K 
Sbjct: 276 NEQIQFFLENSDDWVHNEVVDLIVELNPSEIEMTFMTCQFCFHYAGKREQGHILSVMEKY 335

Query: 207 FDVVHKDTGKYFSVLCNIRCHEDQLNKNLH-NSLRVSQVFDDTNKRLMSAFLDI 365
            D++  D  +Y+     IR + +++ K +  N+     +++   KR ++   DI
Sbjct: 336 LDLISNDLHRYYQDK-GIRNYTERVTKMMKINNWLQKIIWEKRWKRELAEKFDI 388


>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 60  EDEDNTWHKFLQDNACFLKDNDTFFSMKDFKKYS 161
           E E    +  L+ + CFLK+NDT   + DF+  S
Sbjct: 248 ESEKEYPYSALKHDQCFLKENDTRVFIDDFRMLS 281


>Z68105-3|CAA92121.2|  442|Caenorhabditis elegans Hypothetical
           protein F13E6.4 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
 Frame = +3

Query: 117 DNDTFFSMKDFKKYSLVQQQAHLIEAVTKVFDVVHKDTGKYFSVLCNIRCHEDQLNK--- 287
           D +  +  +   + S  QQ  H +  +   +     +      V  ++  H  QL     
Sbjct: 340 DPNFMYQQQQQAQNSQQQQTPHTLHQIPNQYQNSQMNDDSAMEVDYSMVSHPQQLQHQHQ 399

Query: 288 -NLHNSLRVSQVFDDTNKRLMSAFLDISN 371
            ++HN++  + V DD N      +L ISN
Sbjct: 400 PHMHNNMPSNYVIDDINPHEFDQYLQISN 428


>AF099918-4|AAN63402.1|  243|Caenorhabditis elegans Hypothetical
           protein H05C05.2b protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 57  PEDEDNTWHKFLQDNACFLKDND--TFFSMKDFKK 155
           P  ++N + KFL++  CFL D D   F  +KD  +
Sbjct: 103 PFSDENYYAKFLKEMYCFLSDIDKNRFSKLKDLSR 137


>AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical
           protein H05C05.2a protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 57  PEDEDNTWHKFLQDNACFLKDND--TFFSMKDFKK 155
           P  ++N + KFL++  CFL D D   F  +KD  +
Sbjct: 296 PFSDENYYAKFLKEMYCFLSDIDKNRFSKLKDLSR 330


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 155 FFEVFHGEKCIIVFKEASIVLKKFMPCVVFIFWQ 54
           +FEV  G + +I F++++I+   F+  + F  W+
Sbjct: 263 YFEVLEGPENVIAFQDSTILHYSFVYPIYFTIWK 296


>AC084153-8|AAK84585.1|  380|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.11 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 363 ISNGKEGIYFLAVNIKERSCNIAXMKCYFSSYLV 464
           IS   E  Y L V+ K+ +CNI     +FS+  +
Sbjct: 38  ISKNDECFYLLEVSTKKTTCNIYLCSYWFSTIFI 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,246,286
Number of Sequences: 27780
Number of extensions: 232080
Number of successful extensions: 556
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)