Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.088
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.82 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 96  DNACFLKDNDTFFSMKDFKKYSLVQQQAHLIEAVTKVFDVVHKDTGKYFSVLCNIRCHED 275
           +NAC LK+ + F    D+  YS V +     +   K      K+    F +     C++ 
Sbjct: 482 ENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLK-----EKENEIDFKIEVTEDCNK- 535

Query: 276 QLNKNLHNSLRVSQVFDDTNKRLMSA 353
             N  L     + Q++ DT+ +L+ A
Sbjct: 536 SFNDLLTQVAELDQIYADTHAKLVQA 561


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 324 DDTNKRLMSAFLDISNGKEGIYFLAVNIKERSCNIAXMKCYFSSYLVQNGTDD 482
           +D ++  +   + ISN K   +FLA  ++E +C  + +         QNG  D
Sbjct: 436 EDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQNGRKD 488


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = +3

Query: 135 SMKDFKKYSLVQQQAHLIEAVTKVFDVVHKDT 230
           ++ +FK  ++ Q + H+ + + K+ + + +DT
Sbjct: 162 NITNFKNSNIFQLKQHMRDTMNKIAETLDEDT 193


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/44 (20%), Positives = 23/44 (52%)
 Frame = +3

Query: 282 NKNLHNSLRVSQVFDDTNKRLMSAFLDISNGKEGIYFLAVNIKE 413
           NK +HN+      +++ N    +   + +N  + +Y+  +NI++
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 474 TDDXQNEPTNFI 509
           TDD QN P+ FI
Sbjct: 396 TDDHQNSPSIFI 407


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 438 KCYFSSYLVQNGTDDXQNE 494
           +CYFSS L ++ T   + E
Sbjct: 307 ECYFSSDLSESETSSDEEE 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,486
Number of Sequences: 438
Number of extensions: 2803
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)