BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C06f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 239 1e-63
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 239 1e-63
Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical pr... 210 6e-55
Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical pr... 210 6e-55
Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical pr... 204 2e-53
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 177 4e-45
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 177 4e-45
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 163 5e-41
U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock prot... 146 8e-36
M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein ( C.ele... 136 7e-33
X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein. 97 5e-21
Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical p... 91 6e-19
Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical pr... 91 6e-19
Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical pr... 43 1e-04
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 40 0.001
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z92849-8|CAB07427.3| 523|Caenorhabditis elegans Hypothetical pr... 29 2.7
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 27 8.1
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 239 bits (584), Expect = 1e-63
Identities = 120/165 (72%), Positives = 125/165 (75%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
AKMDK+Q+HDIVLVGGSTRIPKVQKLL D F+GKELNKSINPDE IL GD
Sbjct: 325 AKMDKSQVHDIVLVGGSTRIPKVQKLLSDLFSGKELNKSINPDEAVAYGAAVQAAILSGD 384
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
KSE VQD GIETAGGVMT LIKRN YSDNQPGVLIQV+
Sbjct: 385 KSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGVLIQVY 444
Query: 361 EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
EGERAMTKDNNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNV
Sbjct: 445 EGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNV 489
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 239 bits (584), Expect = 1e-63
Identities = 120/165 (72%), Positives = 125/165 (75%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
AKMDK+Q+HDIVLVGGSTRIPKVQKLL D F+GKELNKSINPDE IL GD
Sbjct: 325 AKMDKSQVHDIVLVGGSTRIPKVQKLLSDLFSGKELNKSINPDEALAYGAAVQAAILSGD 384
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
KSE VQD GIETAGGVMT LIKRN YSDNQPGVLIQV+
Sbjct: 385 KSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGVLIQVY 444
Query: 361 EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
EGERAMTKDNNLLGKFEL+GIPPAPRGVPQIEVTFDIDANGILNV
Sbjct: 445 EGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNV 489
>Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.5 protein.
Length = 645
Score = 210 bits (512), Expect = 6e-55
Identities = 103/165 (62%), Positives = 119/165 (72%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
AK+DK++I ++VLVGGSTR+PK+QKLL+DFFNGKELN SINPDE +L G
Sbjct: 325 AKLDKSKIDEVVLVGGSTRVPKIQKLLKDFFNGKELNCSINPDEAVAFGAAVQAAVLSGV 384
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
K E ++D GIETAGGVMT LI RN Y+DNQPGV IQV+
Sbjct: 385 KDETIKDVLLVDVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVY 444
Query: 361 EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
EGERAMT+DN+ LG FEL+GIPPAPRGVPQIEVTFDIDANGILNV
Sbjct: 445 EGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFDIDANGILNV 489
>Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.4 protein.
Length = 645
Score = 210 bits (512), Expect = 6e-55
Identities = 103/165 (62%), Positives = 119/165 (72%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
AK+DK++I ++VLVGGSTR+PK+QKLL+DFFNGKELN SINPDE +L G
Sbjct: 325 AKLDKSKIDEVVLVGGSTRVPKIQKLLKDFFNGKELNCSINPDEAVAFGAAVQAAVLSGV 384
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
K E ++D GIETAGGVMT LI RN Y+DNQPGV IQV+
Sbjct: 385 KDETIKDVLLVDVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVY 444
Query: 361 EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
EGERAMT+DN+ LG FEL+GIPPAPRGVPQIEVTFDIDANGILNV
Sbjct: 445 EGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFDIDANGILNV 489
>Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical
protein C12C8.1 protein.
Length = 643
Score = 204 bits (499), Expect = 2e-53
Identities = 100/165 (60%), Positives = 117/165 (70%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
AK DK +I ++VLVGGSTRIPK+QKLL++FFNGK+LN SINPDE +L G
Sbjct: 325 AKTDKGRIDEVVLVGGSTRIPKIQKLLKEFFNGKDLNCSINPDEAVAFGAAVQAAVLSGV 384
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
K + ++D GIETAGGVMT LI RN Y+DNQPGV IQV+
Sbjct: 385 KDDTIKDVLLVDVVPLSHGIETAGGVMTNLIDRNTRIPAKASKTFTTYADNQPGVSIQVY 444
Query: 361 EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
EGERAMT+DN+ LG FELTGIPPAPRGVPQ++VTFDIDANGILNV
Sbjct: 445 EGERAMTRDNHRLGTFELTGIPPAPRGVPQVDVTFDIDANGILNV 489
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 177 bits (431), Expect = 4e-45
Identities = 89/163 (54%), Positives = 109/163 (66%)
Frame = +1
Query: 7 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKS 186
+ K +H+IVLVGGSTRIPKVQ+L+++FFNGKE ++ INPDE ++ G+
Sbjct: 356 LKKDDVHEIVLVGGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGE-- 413
Query: 187 EEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEG 366
E+ + GIET GGVMT LI RN +DNQP V IQVFEG
Sbjct: 414 EDTGEIVLLDVNPLTMGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADNQPTVTIQVFEG 473
Query: 367 ERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
ER MTKDN+ LGKF+LTG+PPAPRGVPQIEVTF+ID NGIL+V
Sbjct: 474 ERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILHV 516
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 177 bits (431), Expect = 4e-45
Identities = 89/163 (54%), Positives = 109/163 (66%)
Frame = +1
Query: 7 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKS 186
+ K +H+IVLVGGSTRIPKVQ+L+++FFNGKE ++ INPDE ++ G+
Sbjct: 356 LKKDDVHEIVLVGGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGE-- 413
Query: 187 EEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEG 366
E+ + GIET GGVMT LI RN +DNQP V IQVFEG
Sbjct: 414 EDTGEIVLLDVNPLTMGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADNQPTVTIQVFEG 473
Query: 367 ERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
ER MTKDN+ LGKF+LTG+PPAPRGVPQIEVTF+ID NGIL+V
Sbjct: 474 ERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILHV 516
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 163 bits (397), Expect = 5e-41
Identities = 84/165 (50%), Positives = 103/165 (62%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
A M K +H+IVLVGGSTRIPKVQ+L++D+FNGKE ++ INPDE ++ G
Sbjct: 351 ADMKKTDVHEIVLVGGSTRIPKVQQLIKDYFNGKEPSRGINPDEAVAYGAAVQAGVIGG- 409
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
E D GIET GGVMT LI RN +D+Q V I ++
Sbjct: 410 -VENTGDVVLLDVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIY 468
Query: 361 EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
EGER M DN+ LG F++TGIPPAPRGVPQIEVTF+ID NGIL+V
Sbjct: 469 EGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHV 513
>U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock protein
protein 6 protein.
Length = 657
Score = 146 bits (354), Expect = 8e-36
Identities = 79/165 (47%), Positives = 99/165 (60%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
A++ +QI D++LVGG +R+PKVQ +Q+ F GK +K++NPDE +L GD
Sbjct: 352 AEVKSSQIADVLLVGGMSRMPKVQATVQEIF-GKVPSKAVNPDEAVAMGAAIQGAVLAGD 410
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
V D GIET GG+MT LI RN +D Q V I+VF
Sbjct: 411 ----VTDVLLLDVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVF 466
Query: 361 EGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNV 495
+GER M N LLG+F L GIPPAPRGVPQ+EVTFDIDANGI+NV
Sbjct: 467 QGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNV 511
>M28528-1|AAA28076.1| 288|Caenorhabditis elegans protein (
C.elegans heat shockprotein 4 gene, 3' end. ).
Length = 288
Score = 136 bits (330), Expect = 7e-33
Identities = 71/146 (48%), Positives = 88/146 (60%)
Frame = +1
Query: 58 IPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXG 237
IPKVQ+L++D+FNGKE ++ INPDE ++ G E D G
Sbjct: 1 IPKVQQLIKDYFNGKEPSRGINPDEAVAYGAAVQAGVIGG--VENTGDVVLLDVNPLTLG 58
Query: 238 IETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFELT 417
IET GGVMT LI RN +D+Q V I ++EGER M DN+ LG F++T
Sbjct: 59 IETVGGVMTKLIGRNTVIPTKKSQVFPTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVT 118
Query: 418 GIPPAPRGVPQIEVTFDIDANGILNV 495
GIPPAPRGVPQIEVTF+ID NGIL+V
Sbjct: 119 GIPPAPRGVPQIEVTFEIDVNGILHV 144
>X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein.
Length = 487
Score = 97.5 bits (232), Expect = 5e-21
Identities = 57/141 (40%), Positives = 75/141 (53%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGD 180
A++ +QI D++LVGG +R+PKVQ +Q+ F GK +K++NPDE +L GD
Sbjct: 352 AEVKSSQIADVLLVGGMSRMPKVQATVQEIF-GKVPSKAVNPDEAVAMGAAIQGAVLAGD 410
Query: 181 KSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVF 360
V D GIET GG+MT LI RN +D Q V I+VF
Sbjct: 411 ----VTDVLLLDVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVF 466
Query: 361 EGERAMTKDNNLLGKFELTGI 423
+GER M N LLG+F L GI
Sbjct: 467 QGEREMATSNKLLGQFSLVGI 487
>Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 90.6 bits (215), Expect = 6e-19
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 1/164 (0%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLL-QDFFNGKELNKSINPDEXXXXXXXXXXXILHG 177
A + K+QI++IVLVGGSTRIP ++ ++ Q F + + +SI+PDE +L G
Sbjct: 321 ANLKKSQINEIVLVGGSTRIPILKNIIKQSFESNTRICESIHPDEAVAYGAAIMAAVLSG 380
Query: 178 DKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQV 357
+EEVQD G++ M+ LIK+ D Q + + V
Sbjct: 381 --AEEVQDMRLIDVIPMSIGVQCNRDYMSVLIKKGTVFPCTKRKTFINSDDFQTSINVPV 438
Query: 358 FEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 489
+EGER + N LG+ L I P RG +++T ++D NGIL
Sbjct: 439 YEGERVLCSHNRQLGEISLP-IQPKRRGESVVDITLEVDYNGIL 481
>Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 90.6 bits (215), Expect = 6e-19
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 1/164 (0%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLL-QDFFNGKELNKSINPDEXXXXXXXXXXXILHG 177
A + K+QI++IVLVGGSTRIP ++ ++ Q F + + +SI+PDE +L G
Sbjct: 321 ANLKKSQINEIVLVGGSTRIPILKNIIKQSFESNTRICESIHPDEAVAYGAAIMAAVLSG 380
Query: 178 DKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQV 357
+EEVQD G++ M+ LIK+ D Q + + V
Sbjct: 381 --AEEVQDMRLIDVIPMSIGVQCNRDYMSVLIKKGTVFPCTKRKTFINSDDFQTSINVPV 438
Query: 358 FEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 489
+EGER + N LG+ L I P RG +++T ++D NGIL
Sbjct: 439 YEGERVLCSHNRQLGEISLP-IQPKRRGESVVDITLEVDYNGIL 481
>Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical
protein F54C9.2 protein.
Length = 450
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPD 129
A +D A + +IVLVGGST++P V+K++ FF K N ++P+
Sbjct: 356 ANLDTADVDEIVLVGGSTQVPAVRKIVGRFFK-KSANYGVDPE 397
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 22 IHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 132
I VL+G TR+PKVQ+++Q KE+ K +N DE
Sbjct: 366 IDQFVLMGAGTRVPKVQEIVQKTIGTKEIGKFLNTDE 402
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/38 (44%), Positives = 29/38 (76%)
Frame = +1
Query: 19 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 132
+I +I +VGGS+RIP ++++++D F GKE ++N DE
Sbjct: 337 EIDEIEIVGGSSRIPMIREIVKDLF-GKEPKTTMNQDE 373
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 132
A++ I +VL+G TR+PKV+++L+ KE++ +N DE
Sbjct: 346 AQISTNDIDLVVLMGAGTRVPKVKEILKTILKDKEISNFLNTDE 389
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 1 AKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 132
A++ I +VL+G TR+PKV+++L+ KE++ +N DE
Sbjct: 362 AQISTNDIDLVVLMGAGTRVPKVKEILKTILKDKEISNFLNTDE 405
>Z92849-8|CAB07427.3| 523|Caenorhabditis elegans Hypothetical
protein H12D21.10 protein.
Length = 523
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = -3
Query: 207 QQILHLLRLVTVQDSSLDSCTISYGLVRVNRFVELLSIKEILQELLHLGDTSGATHQYN 31
Q ILH L + + L+ I L R F ++L+IKEIL+ L HL + S YN
Sbjct: 327 QFILHRLG-IRQPKADLEKARIVI-LSRSTAFRKILNIKEILRSLGHLPNVSTRVVDYN 383
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 404 LPSKLLSLVIARSPSNTW 351
+P+K+L+L I RSPS W
Sbjct: 26 IPTKMLALQIQRSPSTIW 43
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 404 LPSKLLSLVIARSPSNTW 351
+P+K+L+L I RSPS W
Sbjct: 26 IPTKMLALQIQRSPSTIW 43
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 404 LPSKLLSLVIARSPSNTW 351
+P+K+L+L I RSPS W
Sbjct: 26 IPTKMLALQIQRSPSTIW 43
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.138 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,120
Number of Sequences: 27780
Number of extensions: 223583
Number of successful extensions: 505
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -