Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C05f
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   0.35 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   0.46 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   3.2  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    25   4.3  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   4.3  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   4.3  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   4.3  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    24   5.6  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    24   5.6  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    24   5.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   5.6  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    24   7.5  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    23   9.8  
SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces po...    23   9.8  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    23   9.8  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    23   9.8  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.35
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 308 VSRDIRTTTEARRPGTARNTRRPK 237
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 0.46
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 308 VSRDIRTTTEARRPGTARNTRRPK 237
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 294 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 196
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 281 EARRPGTARNTRRPKPTELSACCRERSETPRHRN 180
           EA  PG  RNTR+    ++S     ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 332 TPPGRVRAVSRDIRTTTEARRPGTARNTRRPKPTE-LSACCRERSET 195
           TP G +RAV    +  TEA +  T    R  +  E +   CR   E+
Sbjct: 168 TPRGPIRAVQVTAKQNTEAPKVSTTHIVRATEEEEWVELDCRPERES 214


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 206 RSETPRHRNKPSRPVWSRRSPHH 138
           R +  R  N P  P W+ R+ HH
Sbjct: 885 REQYERSLNLPMGPEWTTRASHH 907


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 272 RPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 147
           RP  + +      TE+SA     SE  R++ K SR  +SR S
Sbjct: 174 RPANSTSVPNAVNTEISAARATESEASRNQTKASRD-YSRAS 214


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 316 SEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQR 197
           ++P    +G  + PGA+ Q  T   R  +   +++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 266 GTARNTRRPKPTELSACCRERSETPRHRNKPSRPV 162
           GTA + R   P   SA  + +S TP   N  + PV
Sbjct: 188 GTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 338 PVTPPGRVRAVSRDIRTTTEARRPGTA 258
           P +    VRA +R+IR  ++  RP T+
Sbjct: 88  PTSKTNNVRAKARNIRNPSQRLRPSTS 114


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 323 GRVRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSP 144
           GRV   S  +R+ + +  P  AR+ R P   E S     RS +PR+R++   P    RSP
Sbjct: 104 GRVHGDSGRLRSRSPS--PHEARS-RSPYNDERSD---RRSMSPRYRSRSRSPDGRSRSP 157

Query: 143 HH 138
            +
Sbjct: 158 DY 159


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +3

Query: 147 TPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSDPPR 326
           TPS P  S   +P    + A+P        + T S       P + G P V A G++ P 
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488

Query: 327 RG 332
            G
Sbjct: 489 TG 490


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 334 SPLRGGSEP*AGTSGPPQRPGAQAQRETLGV 242
           +P++  + P   +   P+ PG  +  E +GV
Sbjct: 393 TPIKSATHPLLSSYSEPKTPGVSSVHEAMGV 423


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -1

Query: 290 TTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSR 168
           TTT+   P     T  P P   S   ++ +  P  +  P++
Sbjct: 145 TTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTK 185


>SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 44

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 107 SSSISKYYNGNGVDSVETKQVE 172
           SSSI   YN N  D V+T+ ++
Sbjct: 10  SSSIVNAYNNNPTDVVKTQNIK 31


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 286 PQRPGAQAQRETLGVRSRQS*ALAAGSAQRRP 191
           P +P   +  +TLG  +R S A  AGS    P
Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 318 GQSREQGHQDHHRGPAPRHSEKHSASEADRAERL 217
           G   E+       GP   +SE++   ++DR +RL
Sbjct: 276 GTGEEEEDYSSFYGPRSTYSEQNEIIDSDRMDRL 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,967
Number of Sequences: 5004
Number of extensions: 24689
Number of successful extensions: 100
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)