Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C05f
(341 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.38
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 0.66
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 29 0.66
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 1.2
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 2.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 2.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 2.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 2.7
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 2.7
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 27 3.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 27 3.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 27 3.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 27 3.5
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 27 4.7
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 26 6.1
U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical pr... 26 6.1
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 26 6.1
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 26 6.1
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical p... 26 8.1
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 26 8.1
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 26 8.1
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 26 8.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 26 8.1
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 26 8.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 26 8.1
AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical ... 26 8.1
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 26 8.1
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 26 8.1
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 314 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 138
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 301 GTSGPPQRPGAQAQRETLGVRS 236
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 318 GQSREQGHQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTEST 142
G S + HH+ P P H H + + E++ ++ DAP T T LV +S
Sbjct: 213 GPSGPSYYSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSP 269
Query: 141 PFP 133
P
Sbjct: 270 KSP 272
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -2
Query: 328 LRGGSEP*AGTSGPPQRPGAQAQ 260
L GG P G SGPP RPGA Q
Sbjct: 203 LPGGDAP-PGPSGPPGRPGAPGQ 224
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 338 PVTPPGRVRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVW 159
P PP + A S + +++E +A+NT P TE +ET KP + V
Sbjct: 104 PPAPPPQSSAESSGLPSSSEQEEEASAQNTTVPSSTE-ELMTLGVTETNMKTEKPDKGVL 162
Query: 158 SRRSP 144
SP
Sbjct: 163 KILSP 167
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -1
Query: 326 PGRVRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 171
P RA SR ARR + ++ P P A R +S R R PS
Sbjct: 329 PAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -1
Query: 329 PPGRVRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 150
PP RA SR RR +A + P P + + RS P+ P+R RR
Sbjct: 358 PPAPKRAKSRSKSPPARRRRSPSASKSP-PAPRRRRSPSKSRSPAPKREIPPAR---RRR 413
Query: 149 SP 144
SP
Sbjct: 414 SP 415
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -1
Query: 329 PPGRVRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWS-- 156
PP R R S + A + +R+ P P + + +S PR R PS+ +
Sbjct: 407 PPARRRR-SPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPR 465
Query: 155 -RRSP 144
RRSP
Sbjct: 466 RRRSP 470
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = -1
Query: 338 PVTPPGRVRAVSRD------IRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNK 177
P+ PP + R++SRD I+ RR + +T P+PT + + ETP
Sbjct: 2347 PIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS-DETP----A 2401
Query: 176 PSRPVWSR 153
P RP SR
Sbjct: 2402 PVRPPRSR 2409
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = -1
Query: 338 PVTPPGRVRAVSRD------IRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNK 177
P+ PP + R++SRD I+ RR + +T P+PT + + ETP
Sbjct: 2347 PIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS-DETP----A 2401
Query: 176 PSRPVWSR 153
P RP SR
Sbjct: 2402 PVRPPRSR 2409
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = -1
Query: 338 PVTPPGRVRAVSRD------IRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNK 177
P+ PP + R++SRD I+ RR + +T P+PT + + ETP
Sbjct: 2347 PIAPPRKGRSLSRDAERLLEIQPRAPPRRSRQSGDTLSPEPTPVLTLVKS-DETP----A 2401
Query: 176 PSRPVWSR 153
P RP SR
Sbjct: 2402 PVRPPRSR 2409
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 285 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 181
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 290 TTTEARRPGTARNTRRPKPTELSACCRERSETP 192
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 308 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 195
V +++RT+ RRP T R P+ SA R++ ++
Sbjct: 26 VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 331 PLRGGSEP*AGTSGPPQRPGAQAQ 260
P GGS P AGT PP P + Q
Sbjct: 315 PQAGGSPPPAGTGSPPPPPRQKRQ 338
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 331 PLRGGSEP*AGTSGPPQRPGAQAQ 260
P GGS P AGT PP P + Q
Sbjct: 336 PQAGGSPPPAGTGSPPPPPRQKRQ 359
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 331 PLRGGSEP*AGTSGPPQRPGAQAQ 260
P GGS P AGT PP P + Q
Sbjct: 321 PQAGGSPPPAGTGSPPPPPRQKRQ 344
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 336 GHPSGAGQSREQGHQDHHRGPAPRH-SEKHSASE 238
G P+ + Q+ H HH PAPRH S H E
Sbjct: 25 GSPT-SDQNGNSHHHHHHLPPAPRHLSSSHHQIE 57
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 272 RPGTARNTRRPKPTEL 225
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 321 AGQSREQGHQDHHRGPAPRHSEKHS 247
A Q++EQ HQ HH+ P+ + S
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS 350
>U42437-4|AAA83498.2| 349|Caenorhabditis elegans Hypothetical
protein F30B5.7 protein.
Length = 349
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -3
Query: 333 HPSGAGQSREQGHQDHHRG 277
H G E GHQ HH G
Sbjct: 330 HGGAEGNGTEHGHQHHHHG 348
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 311 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 219
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 311 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 219
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -3
Query: 336 GHPSGAGQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 184
G P G G+ G + P PR + + + G R APSP
Sbjct: 157 GPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSP 207
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/51 (27%), Positives = 19/51 (37%)
Frame = -3
Query: 336 GHPSGAGQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPSP 184
G P G G+ G + P PR + + + G R APSP
Sbjct: 157 GPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRSAPSP 207
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 297 HQDHHRGPAPRHSEKHSASEADRAE 223
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>Z75549-4|CAA99919.2| 304|Caenorhabditis elegans Hypothetical
protein T19C4.4 protein.
Length = 304
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 62 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 211
+R++ +T L+Q + S+ +YYN N +V S DG SL P
Sbjct: 218 IRIAFITCLVQACGTALSVIRYYNMNTSMAVTLANFIPFIS-DGLSLVQP 266
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 319 GSEP*AGTSGPPQRPGAQAQR 257
GS+ GT+GPP PG + ++
Sbjct: 274 GSDGNPGTAGPPGNPGGEGEK 294
>Z48009-11|CAA88088.2| 467|Caenorhabditis elegans Hypothetical
protein AH6.5 protein.
Length = 467
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 334 SPLRGGSEP*AGTSGPPQRPGAQAQRETL 248
+PL GGS + T+ PPQ P Q+ L
Sbjct: 8 APLAGGSLSSSATAQPPQPPPGHQQQHPL 36
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 155 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 268
E + V DG+SL + SKR+ L+ +D + + LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 322 GGSEP*AGTSGPPQRPGAQAQRETLGVRSRQS 227
GG+ P +GT+ PP P + L +R Q+
Sbjct: 266 GGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 322 GGSEP*AGTSGPPQRPGAQAQRETLGVRSRQS 227
GG+ P +GT+ PP P + L +R Q+
Sbjct: 566 GGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 330 PSGAGQSREQGHQDHHRGPAPRHS 259
PS G+ H HH+ APR S
Sbjct: 19 PSDLGRGHHHHHHHHHKTKAPRTS 42
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 218 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 123
CC S P+ + SRP + HFHC I
Sbjct: 97 CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Frame = -3
Query: 336 GHPSGAGQSREQGHQ--DHHRGPAPRHSEKH 250
GH GAG GH HH P H E H
Sbjct: 614 GH-HGAGYGAHHGHHGAHHHHAPHHEHHEHH 643
>AL110500-7|CAB54490.1| 489|Caenorhabditis elegans Hypothetical
protein Y87G2A.7 protein.
Length = 489
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 62 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 214
++LS+ L QQ+ S+ + Y ++ V KQ+ ++ GA PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 297 HQDHHRGPAPRHSEKHSASEADRAE 223
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 98 IVVLTSSSWRDVIKP 54
I+ TS++W+DVIKP
Sbjct: 15 IIPTTSATWKDVIKP 29
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,251,254
Number of Sequences: 27780
Number of extensions: 170796
Number of successful extensions: 1021
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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