Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom... 31 0.14
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 28 0.97
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 5.2
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 5.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 6.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 6.8
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
>SPBC31F10.02 |||thioesterase superfamily
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 30.7 bits (66), Expect = 0.14
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Frame = +2
Query: 11 MTYSARGTRLLKALEN-YCNGNKAHYFDSKMIFSKLKTTHLTDGCLKGSFVVDPSMCNIG 187
M ++ GT++L + + + + + FD+ ++ S ++ G ++ S + N
Sbjct: 1 MAINSSGTKVLSFVRSVWQDFVNTNGFDAHVV-SDIQIISAVPGFVECSLKLQKHHLNRM 59
Query: 188 DTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKR-ARLGDTITVESNLLKGGA 364
LHGG +A++ D AL SR G + +MN ++L+ LG +I + + + G+
Sbjct: 60 GNLHGGCIAALTDLGGSLALASRGLFISGVSIDMNQTFLQSGGTLGSSILLHAKCDRLGS 119
Query: 365 S 367
+
Sbjct: 120 N 120
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 0.97
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 44 KALENYCNGNKAHYFDSKMIFSKLKTTHLTDGCLKGSFVVDPSMCNIG--DTLHGGYMAS 217
KAL++ GN A Y D + F+ T L+ ++ CN+ D+ + + S
Sbjct: 60 KALDDKAEGNFAGYEDLRRQFAAKSDTKDAPSSLQLQNLLSALTCNVSRLDSSNSSLVMS 119
Query: 218 VMDAV 232
V+D+V
Sbjct: 120 VLDSV 124
>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2
Query: 188 DTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKRARLGDTITVESNL 349
DT+H G +A+ MD V ++ T N+ +S +A + S+L
Sbjct: 150 DTIHPGLIATCMDEVLAICSFLSLPNKIAVTANLKLSNPTKAYTNHFYILRSHL 203
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -3
Query: 495 QTHQSLSYFSRFSENLSLPEMNEVVLLATGAPSPSCRMTSITELAPPFSKFDSTVIVSPS 316
Q SL YF F+E++ E E L+A G PS P S F ++ + +
Sbjct: 246 QLSPSLHYFDEFNESVISEEGTEAFLVARG-PSVGIASRISLRTIPTQSCFSEKLLKAAN 304
Query: 315 L 313
L
Sbjct: 305 L 305
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 80 EPYFHCNNFPKPSTSVYREHYKS 12
+PY+ N P PS S +HY++
Sbjct: 329 DPYYRVNLVPVPSDSQTSQHYEA 351
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -3
Query: 486 QSLSYFSRFSENLSLPEMNEVVLLATGAPSPSCRMTSITELAPPFSKFDSTVIVS 322
++L+Y + +E + + L T PSPS ++ P S S+++ S
Sbjct: 413 ETLTYVTTLTETILTTTYDSHTFLTTITPSPSNSISYTNNTFIPSSSIKSSIVYS 467
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 224 DAVSLYALISRSDGRLGWTTNMNI 295
DA+ L++ +DGR+G TTN+ +
Sbjct: 901 DALYPMELLTLTDGRIGITTNLTL 924
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 6.8
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Frame = +2
Query: 41 LKALENYCNGNKAHYFDSKMIFSKLKTTHLTDGCLKGSFVVDPSMCNIGDTLHGGYMASV 220
LKA E +C+ ++ K T C G ++ D LH +
Sbjct: 1010 LKAKEIFCSLQNEDFYSELQSIIKCLTNENEPVCYLGLQKLELFFQAKVDELHDTLNLDI 1069
Query: 221 MDAVSLYALISRSDGRLGW-TTNMNISYLKRARLGDTITVESNLLK 355
+ V L D + + +TNM ISYL LG+ ++ + K
Sbjct: 1070 SNEVLDQLLRCLLDCCVKYASTNMQISYLAAKNLGELGAIDPSRAK 1115
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 189 SPILHIEGSTTNDPFRQPSV 130
S + I+GS NDPFRQPS+
Sbjct: 10 SQLKGIDGSF-NDPFRQPSM 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,101
Number of Sequences: 5004
Number of extensions: 45918
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -