Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0279 + 16211180-16211410,16211516-16211659,16212466-162125... 46 2e-05
01_06_1566 + 38283781-38283909,38283985-38284128 39 0.002
07_03_0285 - 16255374-16255460,16255519-16255662,16255772-16256002 34 0.080
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 30 1.3
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049... 29 2.3
09_04_0120 + 14836644-14836949,14837038-14837664,14837916-14838359 29 3.0
12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403 28 4.0
07_01_0266 + 1977961-1978120,1979547-1979680,1979813-1979911,198... 27 9.1
07_01_0044 - 348439-349539,351979-352301,352418-352550 27 9.1
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 27 9.1
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 27 9.1
03_05_0668 - 26584865-26585058,26587411-26587846,26587962-265880... 27 9.1
>07_03_0279 +
16211180-16211410,16211516-16211659,16212466-16212597,
16213478-16213591
Length = 206
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +2
Query: 152 SFVVDPSMCNIGDTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKRARLGDTI 331
+ V P+ N +TLHGG +A+V +AV + + + + + ++ +YL ARL +
Sbjct: 69 TLTVSPAAVNGYNTLHGGMVAAVAEAVGMACARAAAGDKEMFLGELSTAYLSAARLNSEV 128
Query: 332 TVESNLLKGGASSVMEVI 385
VE+ +L+ G S V+ +
Sbjct: 129 EVEAQILRKGRSVVVTTV 146
>01_06_1566 + 38283781-38283909,38283985-38284128
Length = 90
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +2
Query: 194 LHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKRARLGDTITVESNLLKGGASS- 370
+HGG +AS++D V + + G T + +SYL AR + I +E+ +L G ++
Sbjct: 1 MHGGAVASLVDLVGSAVFFAGGSPKTGVTVEITVSYLDAARANEEIEMEARVLGIGETTG 60
Query: 371 -VMEVILHDGEGAPVAXS-TTSFISGSDK 451
V + G G +A T +++ S K
Sbjct: 61 CVTVEVRRKGAGEVLAHGRITKYLAVSSK 89
>07_03_0285 - 16255374-16255460,16255519-16255662,16255772-16256002
Length = 153
Score = 33.9 bits (74), Expect = 0.080
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 152 SFVVDPSMCNIGDTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKRARLGDTI 331
+ V P+ N +TLHGG +A+V + V + + + + + ++ +YL ARL I
Sbjct: 69 TLTVSPAAVNAYNTLHGGMVAAVAEVVGMACARAAAGDKEMFLGELSAAYLSAARLNKKI 128
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 331 YCISKSGTFEVTNVHIGGPA*SAI*SAYQCIQGDSVHHRC 212
YC+SKS E T V + G + S I Y ++G +H C
Sbjct: 402 YCLSKSCENETTAVFVNGVSYSGIRGTYD-VRGPPIHFGC 440
>07_03_0008 +
12303536-12303893,12303910-12304176,12304635-12304951,
12304975-12305819,12305859-12306069
Length = 665
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +2
Query: 161 VDPSMCNIGDTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYL--KRARLGDTIT 334
V P C I L + ++ SL ++R R+G NM +SY+ R+ + +
Sbjct: 428 VSPVQCMISQWLENIRLTGPVECTSL---VTRLACRVGALINMQVSYITTPRSYVDEAYL 484
Query: 335 VESNLLKGGASSVM 376
V+ ++LK G + +
Sbjct: 485 VQGHILKHGPNDTL 498
>09_04_0120 + 14836644-14836949,14837038-14837664,14837916-14838359
Length = 458
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 206 YMASVMDAVSLYAL-ISRSDGRLGWTTNMNISYLKRARLGDTITVESNL 349
Y +V+ + L+ L S G LGWT I L+ G +ITV NL
Sbjct: 332 YSIAVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNL 380
>12_01_1072 - 11106298-11106660,11109176-11109463,11109537-11110403
Length = 505
Score = 28.3 bits (60), Expect = 4.0
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +2
Query: 197 HGGYMASVMDAVSLYALISRSD-GRLG--WTTNMNISYLKRARLGDTITVESNLLKGGAS 367
H ++AS + A +R D G LG W+ + S +K A LG+ ++ S + G+
Sbjct: 371 HEAHLASAEATAATLARSTREDPGSLGEGWSCFLGKSLVKEADLGELVSSGSLIEGQGSC 430
Query: 368 SVMEVILHDGEGAPVAXSTTSFISGSDKFSEN 463
V+ G+G V + F +G S+N
Sbjct: 431 GGEAVVPSPGDGRTVVFA-AYFAAGLRLPSDN 461
>07_01_0266 +
1977961-1978120,1979547-1979680,1979813-1979911,
1980257-1980414,1981930-1982018,1982678-1982769,
1983658-1983706,1983953-1983966
Length = 264
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +2
Query: 14 TYSARGTRLLKALENYCNGNKAHYFDSKMIFSKLKTTHLTDGCLKGSFVVDPSM 175
+YSARG R K + +K + K++ T + D C ++ +M
Sbjct: 164 SYSARGGRFAKITLRFAGNSKMQLGTIFISMLKIQMTEILDRCTMDPIIISATM 217
>07_01_0044 - 348439-349539,351979-352301,352418-352550
Length = 518
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 182 IGDTLHGGYMASVMDAVSLY-ALISRSDGRLGWTTNMNISYLKRARLGDTITVESNLL 352
IGD + GY A V+ + +Y A + S G LGW I L+ G +I V N+L
Sbjct: 379 IGD-IPKGYAAVVVLFICMYVAGFAWSWGPLGWLVPSEIFPLEIRPAGQSINVSVNML 435
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 319 WRYNNSGVEFTKGRCEFSDGSHSA*RRRRTGGQXHDLVHLWK 444
WR ++SG + + +D H + +R +GG L LWK
Sbjct: 360 WRRHSSGAAAGERVAKDTDEHHVSGGKRNSGGAMRMLSELWK 401
>04_03_0199 - 12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 343 RLHCYCISKSGTFEVTNVHIG 281
++HC C KS F +++VH G
Sbjct: 1084 KIHCSCSDKSRNFSLSSVHNG 1104
>03_05_0668 -
26584865-26585058,26587411-26587846,26587962-26588016,
26588299-26588642
Length = 342
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = -3
Query: 459 SENLSLPEMNEVVLLATGAPSPSCRMTSITELAPP-------FSKFDSTVIVSPSLA 310
++NL N ++LL +G +P+ R + APP F +FDS ++ P+++
Sbjct: 27 NDNLVEDHCNGLLLLKSGVANPATRQWVPSPPAPPQPVWMKDFYRFDSYLVFDPTIS 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,587
Number of Sequences: 37544
Number of extensions: 306194
Number of successful extensions: 715
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -