Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328C01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 142 4e-35
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 141 5e-35
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 3.9
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 5.2
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 5.2
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.0
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 9.0
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 9.0
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 142 bits (343), Expect = 4e-35
Identities = 64/120 (53%), Positives = 85/120 (70%)
Frame = -3
Query: 462 VKTVAAHLKKTGKVKVPEHMDFVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKT 283
+ AA LK++GK+ P+ +D VKT KELAPYDPDW+YVR AAI RHIY+R VGV
Sbjct: 15 INAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGR 74
Query: 282 VTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 103
+ K++GG G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 75 LCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 141 bits (342), Expect = 5e-35
Identities = 64/120 (53%), Positives = 85/120 (70%)
Frame = -3
Query: 462 VKTVAAHLKKTGKVKVPEHMDFVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKT 283
+ AA LK++GK+ P+ +D VKT KELAPYDPDW+YVR AAI RHIY+R VGV
Sbjct: 15 ITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGR 74
Query: 282 VTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 103
+ K++GG G+ PSH SGS+ RK +QSLE + ++EK +GGR ++ QG+RDLDRI
Sbjct: 75 LCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 265 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 375
++D+G +L+ N+ +N+ TK+ S I+ QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 480 CGPGXIVKTVAAHLKKTGKVKVPEHMDFVKTA 385
C P I K AA+ T +K PE +D + A
Sbjct: 809 CEPTTISKATAANYIMTHLIKNPEELDLILVA 840
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 389 QLASKSWLRMTLIGSMCVVL 330
+L SKSWL + +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 341 CVVLPSFVIFTFAHLLESRL 282
C+V S V+F AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2
Query: 319 SYLHSLTCWSQDCHQDLWW 263
S+ + +T + Q CH++LW+
Sbjct: 1149 SFQNLVTVFCQSCHKELWY 1167
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +1
Query: 115 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 207
VSS C E T L+ +N ++C+ LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 445 SSDSFNNLAWSTSFTVTERILQKKL 519
SS+ N ST+ T TE+ILQK++
Sbjct: 118 SSNLSMNTISSTALTPTEKILQKRI 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,082
Number of Sequences: 5004
Number of extensions: 37449
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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