Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   160   5e-40
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   5.2  
11_01_0645 + 5185341-5185568,5185773-5185823                           27   6.9  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    27   9.1  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   9.1  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  160 bits (389), Expect = 5e-40
 Identities = 70/131 (53%), Positives = 96/131 (73%)
 Frame = -3

Query: 495 RHSKGCGPGXIVKTVAAHLKKTGKVKVPEHMDFVKTARFKELAPYDPDWFYVRCAAILRH 316
           R  K   P   VK  +AHLK++GK+++PE +D VKTARFKEL PYDPDW+Y R A+I R 
Sbjct: 7   RTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARK 66

Query: 315 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 136
           IY+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++
Sbjct: 67  IYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLI 126

Query: 135 TTQGRRDLDRI 103
           T+QGRRDLD++
Sbjct: 127 TSQGRRDLDQV 137


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 261 AHQRSW*QS*LQQVSECKYDEGWQHNAHRTNQGHTEPAL*SELSLQNPCAQV 416
           A QR   Q  L  VS     EGWQH++        +  L  E+ +++  AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 315 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 199
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -1

Query: 353 IGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVMELHLHISAGHQAVL 207
           +G++ + LP F+       +   LSPR L+ A V EL L    GH A L
Sbjct: 162 LGNLVLALPGFLSLVAVRSIPQELSPR-LLWAPVFEL-LADHRGHPAFL 208


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 147 HRPELSQQASMPPTIAKPCVQYCLMTCRN 233
           H  +  +  + P TIA+  +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,696
Number of Sequences: 37544
Number of extensions: 265502
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)