Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   3.0  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   3.0  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   5.2  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   9.0  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.0  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   9.0  

>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 310 YHHNKANFYSSSICKGMPSQ-LYPQ 239
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -2

Query: 310 YHHNKANFYSSSICKGMPSQ-LYPQ 239
           Y H  A  YSS+ C G+PS  L PQ
Sbjct: 306 YSHRTAEGYSSNSCLGIPSYFLNPQ 330


>SPAC6F12.13c |fps1||geranyltranstransferase
          Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 19 IPNYLSSLPIPDSVGGWFR 75
          I NYL ++ IPD V  W++
Sbjct: 21 IVNYLKTINIPDDVTEWYK 39


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = -3

Query: 252 SYILNVNKVHNFINVLPDTRVYLTTASFSGFFYCLVRVVRYTANYNCRRNQC*PIFNSKT 73
           S+ L    + +F+N+      YLT  +   F   L +V +    Y CR+N    I  S T
Sbjct: 162 SFALYKYTIPSFLNIQEWADEYLTGKNPERFRIFLWKVDKLLTAYICRKNALLQINKSLT 221

Query: 72  KPSANRIWNRQARQIV 25
               N   N     +V
Sbjct: 222 IDGTNISANLSCTHLV 237


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 187 FDHCQLLWLFLLSGKSSKIYRQLQ 116
           FD C+ LW   +SGK   +  ++Q
Sbjct: 555 FDGCEALWTVSISGKLRNMKSRIQ 578


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 131  IPPTTTVGGISANQSLTPRRNHPPT 57
            IPP   V  I ++ +  P ++HPP+
Sbjct: 969  IPPPLPVSNILSSPTSEPPKDHPPS 993


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 46   IPDSVGGWFRLGVKDWL 96
            +P+S+   FR G+K W+
Sbjct: 1084 VPESINSLFRAGIKFWM 1100


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 469 RNA*S*IKQCNNSFLHNFFEN 407
           +N  S +K+ NNSFL NF  N
Sbjct: 6   KNKESGVKKANNSFLQNFGVN 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,880
Number of Sequences: 5004
Number of extensions: 43245
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)