Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328B11f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein pr... 118 2e-26
BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domai... 118 2e-26
BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domai... 96 6e-20
BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 6e-20
BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 6e-20
BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type... 96 6e-20
AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type ... 96 6e-20
AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized hematop... 96 6e-20
BC014558-1|AAH14558.1| 627|Homo sapiens fem-1 homolog b (C. ele... 34 0.35
BC010122-1|AAH10122.1| 627|Homo sapiens fem-1 homolog b (C. ele... 34 0.35
AF204883-1|AAF69303.1| 627|Homo sapiens FEM1 beta protein. 34 0.35
AF178632-1|AAF05314.1| 627|Homo sapiens FEM-1-like death recept... 34 0.35
AB007856-1|BAA23692.2| 627|Homo sapiens KIAA0396 protein. 34 0.35
S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding pr... 31 2.4
Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein. 29 9.9
AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein. 29 9.9
AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein. 29 9.9
AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein. 29 9.9
>BX537971-1|CAD97935.1| 150|Homo sapiens hypothetical protein
protein.
Length = 150
Score = 118 bits (283), Expect = 2e-26
Identities = 56/125 (44%), Positives = 83/125 (66%), Gaps = 2/125 (1%)
Frame = +1
Query: 4 LVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKAREAGS 180
+VKV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 24 IVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQKD 83
Query: 181 GQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 357
IN I+K+ KVV+ I+IED+ KA+ CRCWRSK +P CDGSH HN+ TGDN GP+
Sbjct: 84 SLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPL 143
Query: 358 VVRHK 372
+++ K
Sbjct: 144 ILKKK 148
>BC032300-1|AAH32300.1| 135|Homo sapiens CDGSH iron sulfur domain 2
protein.
Length = 135
Score = 118 bits (283), Expect = 2e-26
Identities = 56/125 (44%), Positives = 83/125 (66%), Gaps = 2/125 (1%)
Frame = +1
Query: 4 LVKVTIPNYLSSLPIPDSVGGWFRLGVKDWLALIPPTVVVGGISYYSYQT-IKKAREAGS 180
+VKV +P YL LP+P+S+ G+ RL V +WL L+P V+ + Y + + + K ++
Sbjct: 9 IVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFLPKKKQQKD 68
Query: 181 GQINPCIRKDINKVVDFIDIEDIT-EKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 357
IN I+K+ KVV+ I+IED+ KA+ CRCWRSK +P CDGSH HN+ TGDN GP+
Sbjct: 69 SLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPL 128
Query: 358 VVRHK 372
+++ K
Sbjct: 129 ILKKK 133
>BC059168-1|AAH59168.1| 108|Homo sapiens CDGSH iron sulfur domain 1
protein.
Length = 108
Score = 96.3 bits (229), Expect = 6e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 88 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 267
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 268 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 372
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC008474-1|AAH08474.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 6e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 88 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 267
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 268 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 372
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC007043-1|AAH07043.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 6e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 88 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 267
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 268 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 372
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC005962-1|AAH05962.1| 108|Homo sapiens zinc finger, CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 6e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 88 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 267
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 268 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 372
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AY960578-1|AAY32336.1| 108|Homo sapiens zinc finger CDGSH-type
domain 1 protein.
Length = 108
Score = 96.3 bits (229), Expect = 6e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 88 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 267
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 268 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 372
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>AF220049-1|AAF67642.1| 108|Homo sapiens uncharacterized
hematopoietic stem/progenitor cells protein MDS029
protein.
Length = 108
Score = 96.3 bits (229), Expect = 6e-20
Identities = 39/95 (41%), Positives = 57/95 (60%)
Frame = +1
Query: 88 DWLALIPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASL 267
+W+A + I Y +Y+ IN I+KD K+V D+ED+ +KA
Sbjct: 12 EWIAAVTIAAGTAAIGYLAYKRFYVKDHRNKAMINLHIQKDNPKIVHAFDMEDLGDKAVY 71
Query: 268 CRCWRSKNWPYCDGSHGPHNKETGDNTGPVVVRHK 372
CRCWRSK +P+CDG+H HN+ETGDN GP++++ K
Sbjct: 72 CRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 106
>BC014558-1|AAH14558.1| 627|Homo sapiens fem-1 homolog b (C.
elegans) protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.35
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 451 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 365
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>BC010122-1|AAH10122.1| 627|Homo sapiens fem-1 homolog b (C.
elegans) protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.35
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 451 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 365
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>AF204883-1|AAF69303.1| 627|Homo sapiens FEM1 beta protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.35
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 451 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 365
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>AF178632-1|AAF05314.1| 627|Homo sapiens FEM-1-like death receptor
binding protein protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.35
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 451 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 365
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>AB007856-1|BAA23692.2| 627|Homo sapiens KIAA0396 protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.35
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -2
Query: 451 IKQCNNSFLHNFFENYTCYLFVFSWLVCV 365
+K +++ +HN +NY C L+ F +LVC+
Sbjct: 425 VKNISDADVHNAMDNYECNLYTFLYLVCI 453
>S66431-1|AAB28544.1| 1722|Homo sapiens retinoblastoma binding protein
2 protein.
Length = 1722
Score = 31.1 bits (67), Expect = 2.4
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 193 PCIRKDINKVVDFIDIEDITEKASLCRCWRSK-NWPYCDG 309
PC K + V +I++I+ K+ LC C+ K +W CDG
Sbjct: 1623 PCKDKGVVFVTKKREIKNISFKSVLCDCFSKKVDWVQCDG 1662
>Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 258 LLSYILN-VNKVHNFINVLPDTRVYLTTASFSGFFYCLVRVV 136
L YIL+ + K N I + D+ YLT+ ++ YC++ +
Sbjct: 579 LFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEAL 620
>AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 258 LLSYILN-VNKVHNFINVLPDTRVYLTTASFSGFFYCLVRVV 136
L YIL+ + K N I + D+ YLT+ ++ YC++ +
Sbjct: 579 LFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEAL 620
>AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 258 LLSYILN-VNKVHNFINVLPDTRVYLTTASFSGFFYCLVRVV 136
L YIL+ + K N I + D+ YLT+ ++ YC++ +
Sbjct: 579 LFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEAL 620
>AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein.
Length = 1478
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 258 LLSYILN-VNKVHNFINVLPDTRVYLTTASFSGFFYCLVRVV 136
L YIL+ + K N I + D+ YLT+ ++ YC++ +
Sbjct: 464 LFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEAL 505
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,254,698
Number of Sequences: 237096
Number of extensions: 1603325
Number of successful extensions: 3385
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3381
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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