Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    32   0.045
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    30   0.18 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    27   2.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   3.9  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   3.9  
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    26   3.9  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   3.9  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   5.2  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   5.2  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    25   6.8  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    25   6.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   9.0  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +3

Query: 12  GFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEAS 191
           GF  G  E  +   ++   PK  K       LN +    +  ++     SE+ S D + S
Sbjct: 191 GFSTGTNESEITPNIKVLPPKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNS 250

Query: 192 GEQDVLTSEHQVREAVSSQPEE 257
            E++  T+E   ++A  + PE+
Sbjct: 251 SEENKDTNEPSTKDAEKTVPED 272


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 84  EPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLE-ASGEQDVLTSEHQVREAVSSQPEEY 260
           EP+K +          VA+E+E   +++T A  E A   +D  +S +    +  SQ +  
Sbjct: 79  EPNKESGAFGSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSA 138

Query: 261 KPPVIP 278
            PP +P
Sbjct: 139 LPPNVP 144


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = -1

Query: 500 KLSLVL-ILNSRESLTITSP-FCRHT*ISPGFIATFRSFED---FIWWKFYSYIKIH*SL 336
           +L LV+  LN R ++  T+P  C    + P  I  ++ ++    F+  K Y ++    +L
Sbjct: 131 QLDLVIEALNERANMLRTAPHLCT---VLPIMIPVYKWWQVPYFFVGCKIYDWVAGSKNL 187

Query: 335 RPRVIFSVRSIVALASLL 282
           R   IFS  + VA+A +L
Sbjct: 188 RASTIFSKETTVAIAPML 205


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 222 DVQMLGHLV-LHLPRGPPKYLH 160
           D+++  HL  L  P GPPKY+H
Sbjct: 571 DLKVNTHLFRLDKPNGPPKYIH 592


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 218 TSSKGSSFESA*RVQASSNTNTEEKRVLQWSGQRKLL 328
           TSS+   FE    V ++S  N     +LQ S   KLL
Sbjct: 140 TSSQRELFEQKSSVASASKDNVSSSSILQGSASSKLL 176


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 312 DRENYSWAQTLMDLDVTVKLP 374
           +   Y W QT+ D+D+ + +P
Sbjct: 7   EEAEYEWDQTIADVDIVIHVP 27


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 156 ASEDTSADLEASGEQDVLTSE-----HQVREAVSSQPEEYKPPVIP 278
           ++    AD+  S  QD++ +E        R +VSS P  + PP +P
Sbjct: 234 SASSKGADVARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVP 279


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 198 QDVLTSEHQVREAVSSQPEEYKPPVIPIQKRSECYNGADREN 323
           QD+ T ++ ++E   ++ +E    V+ I    + YNG+D  N
Sbjct: 230 QDLRTLKNMIKEGNITEVDELYREVLRIFANCKMYNGSDPAN 271


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -1

Query: 413 FIATFRSFEDFIW--WKFYSYIK 351
           F+A F +  DFIW  ++ Y+Y+K
Sbjct: 416 FVAIFIALSDFIWICYRGYTYLK 438


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 121 MISLFKSVCLCGSFTFLGSHVRRTLITSSSATPGGKPM 8
           MI++F  V + GSF  + +     LIT++    GGKP+
Sbjct: 330 MIAMFTGVVIGGSFNIMWNQRYAKLITAN----GGKPL 363


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 515 SLRLQKLSLVLILNSRESLTITSPFCRH 432
           SL L+ L L+ +L++  +L +TS   RH
Sbjct: 39  SLPLEVLRLIFLLSNNSNLAVTSRSLRH 66


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 434 HT*ISPGFIATFRSFEDFIWWKFYSYIK 351
           H    P ++ T RS EDF+ W   S IK
Sbjct: 141 HVITDPAYLVT-RSLEDFVTWTDTSKIK 167


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 378 LVEVLQLHQDPLEFAPTSNFLCPLHCSTR 292
           +   L++  D  EF P S  L  ++CST+
Sbjct: 296 MAHCLKMFYDETEFLPLSGLLPDMNCSTQ 324


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 318 ENYSWAQTLMDLDVTVKLPPDKIFKRPKSCYKSWRY 425
           E   W  T+   D T+K     +  +  +C KSW+Y
Sbjct: 770 ERVLWINTVQS-DSTIKAFTYNVDTKQLNCIKSWKY 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,913
Number of Sequences: 5004
Number of extensions: 39213
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)