Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.      31   0.50 
U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical p...    29   2.0  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U97016-10|AAP68963.1|  181|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z92847-1|CAE46676.1|  208|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81464-6|CAB03856.2|  102|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF100660-3|AAC68972.1|  179|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 135 AQEVEVIASEDTSADLEASGEQDVLTSEHQV-REAVSSQPEEYKPPVIPIQKRSECYNGA 311
           A+ VEV   E+ +A  +   +  V   E  V  E  +S+  E +     + K +   NGA
Sbjct: 99  AKVVEV-TDEEAAAFEKEQAKNSVENLEKFVDNEGETSKDAEVEDEDSKLMKPNSG-NGA 156

Query: 312 DRENYSWAQTLMDLDVTVKL 371
           D   Y W QTL +L+V + +
Sbjct: 157 DLAKYQWTQTLQELEVKIPI 176


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 135 AQEVEVIASEDTSADLEASGEQDVLTSEHQV-REAVSSQPEEYKPPVIPIQKRSECYNGA 311
           A+ VEV   E+ +A  +   +  V   E  V  E  +S+  E +     + K +   NGA
Sbjct: 99  AKVVEV-TDEEAAAFEKEQAKNSVENLEKFVDNEGETSKDAEVEDEDSKLMKPNSG-NGA 156

Query: 312 DRENYSWAQTLMDLDVTVKL 371
           D   Y W QTL +L+V + +
Sbjct: 157 DLAKYQWTQTLQELEVKIPI 176


>U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical
           protein EEED8.3 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 60  TCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASG 194
           TC   N  + H HTDL  + +  T+ +  + IA +D +    A G
Sbjct: 103 TCYKMNGNQLHVHTDLLGKSLIPTIFEFDKPIARDDNAVSTHAEG 147


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
           protein Y20F4.4 protein.
          Length = 1319

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 243 SQPEEYKPPVIPIQKRS 293
           SQP  Y+PPV P+Q RS
Sbjct: 273 SQPRSYQPPVDPVQDRS 289


>Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical
           protein H12I19.2 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 227 YLMFRC*DILFSTCLEVRRSIFTSNYFDLLSNCRA 123
           Y +F   D +F  CLE+  SI +    +L  NC A
Sbjct: 157 YALFIVKDFIFLLCLEIGNSIGSKRRVELAKNCYA 191


>U97016-10|AAP68963.1|  181|Caenorhabditis elegans Hypothetical
           protein B0261.8 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/82 (20%), Positives = 40/82 (48%)
 Frame = +3

Query: 45  IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASGEQDVLTSEHQ 224
           +KV RTC+ ++ +   ++ +  +EI       + E I  +D     ++  +Q++  S+ +
Sbjct: 39  VKVQRTCEVQDEEAEEENIEFEHEI-------DEEEIEEQDEIVHEQSENDQNLKDSDEK 91

Query: 225 VREAVSSQPEEYKPPVIPIQKR 290
             E V+ +    K   +PI ++
Sbjct: 92  KNEIVALEKSTEKDEELPIPEK 113


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
 Frame = +3

Query: 129 TVAQEVEVIASEDTSADL-EASG---EQDVLTS--EHQVREAVSSQPEEYKPPVIPIQKR 290
           T  Q ++VIA E+T A L E+ G   E++ L S  +H  +E++S + E+ +      +++
Sbjct: 705 TDVQNIDVIAFEETKAQLRESHGQMKEKERLRSLDDHGSKESLSKRMEQERMKQFWQKEK 764

Query: 291 SECYNGADRENYSWAQTL 344
            E       EN S+  +L
Sbjct: 765 HESSRDDANENASFVHSL 782


>Z92847-1|CAE46676.1|  208|Caenorhabditis elegans Hypothetical
           protein H01G02.3a protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 91  CGSFTFLGSHVRRTLITSSSAT 26
           C +F FL +H RRT   SSS++
Sbjct: 90  CNTFAFLRTHTRRTSQASSSSS 111


>Z81464-6|CAB03856.2|  102|Caenorhabditis elegans Hypothetical
           protein C08E8.1 protein.
          Length = 102

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 272 YWRLVLFRLTRNCFPYLMFRC*DI 201
           +W +  F     CFP+L F C D+
Sbjct: 55  WWLICFFGTVLCCFPFLFFLCCDV 78


>AF100660-3|AAC68972.1|  179|Caenorhabditis elegans Hypothetical
           protein H35B03.2b protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +3

Query: 69  PKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASGEQDVLTSEHQVREAVSSQ 248
           PKN+    +     N  +CS    + E +A      + + + E+ V+  + +  E V + 
Sbjct: 83  PKNLLLQAECRGTGNGDVCSMKLSDAEKLAGNGEEEEQDGASEEKVVVGKEEEAEKVKAP 142

Query: 249 PEEYK 263
           P E +
Sbjct: 143 PIEVR 147


>AF100660-2|AAC68971.1|  393|Caenorhabditis elegans Hypothetical
           protein H35B03.2a protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = +3

Query: 69  PKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASGEQDVLTSEHQVREAVSSQ 248
           PKN+    +     N  +CS    + E +A      + + + E+ V+  + +  E V + 
Sbjct: 297 PKNLLLQAECRGTGNGDVCSMKLSDAEKLAGNGEEEEQDGASEEKVVVGKEEEAEKVKAP 356

Query: 249 PEEYK 263
           P E +
Sbjct: 357 PIEVR 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,305,233
Number of Sequences: 27780
Number of extensions: 223584
Number of successful extensions: 638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)