Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 24/79 (30%), Positives = 33/79 (41%)
 Frame = -3

Query: 441 LSTYINISRIYSNF*VF*RFYLVEVLQLHQDPLEFAPTSNFLCPLHCSTRFSSVLVLLEA 262
           LS+Y N   I   F V   F ++E     Q+P+   PT   L      T  +    +L  
Sbjct: 691 LSSY-NCVPINVQFSVLYGFVIIEC----QEPVTNRPTGQLLLDYLTDTVLAYKPKILGK 745

Query: 261 CTLQADSKLLPLLDVQMLG 205
            T+  DS+ L  LD Q  G
Sbjct: 746 PTISPDSRHLVTLDKQETG 764


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 216 EHQVREAVSSQPEEYKPPVIPIQKRSECYNGAD 314
           E    E      E+Y PP +P  ++S   NG +
Sbjct: 139 EDNDEEEAQKPKEQYIPPELPNDEKSLFENGVE 171


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 370 FHQIKSSKDLKVAINPGDIYVCRQNGDVIVKDSL 471
           FH++    D    ++  D+Y+   + D+ +KDS+
Sbjct: 61  FHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSI 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,864
Number of Sequences: 438
Number of extensions: 2837
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)