Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.56 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.73 
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    27   1.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   3.0  
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.0  

>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 96  NFDHDKHIFTGHGGKQRTKKEASEH--TNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 263
           N + D +    H  K    ++ S H   +HFDPS + +K+V+      + K +S  KH
Sbjct: 18  NEEDDDYYSNAHSEKS---EDHSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKH 72


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +3

Query: 120 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 239
           ++GH         ++   NHF+ +GH    +T  +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 81  EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 200
           +YD++N DH  H    H     +  EA+         GHS
Sbjct: 21  DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 512 YVQNIPTYCLAHLXRCPVLNRSLCEWA 432
           Y+QNIP        RC  ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492


>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 341 CGYPRSVRVDARLRDRWXIQGVFYSHKISTSPTHRGCDLERDNAXNEPSSKSVYFGRN 514
           C    +++V+   R  W IQ + Y         HR  DL R+       SK++Y GR+
Sbjct: 10  CAMISTLKVNKIERGYWFIQCLRYCFIYIIKKQHRQADLPRNFGMR---SKALYIGRS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,444
Number of Sequences: 5004
Number of extensions: 40403
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)