Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    29   0.32 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   1.3  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   1.7  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 34  RKQDKLPLDMDGHVRYEGEMTHYVADDLEFKIKLSSPVAKKGETPV 171
           R +D++   +D  +  +G+ T YVADD++ ++ +  P  +    PV
Sbjct: 294 RIKDEMIFSIDISLLEDGQQTPYVADDVQLELIMLDPYYRVNLVPV 339


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 373 NMDVYKDAVGKTCDAMDNNIKSMYTILAKGEEVSQA 480
           NM+ Y+ A+ K  + MDNN+  +Y +L   ++++ A
Sbjct: 550 NMEAYEQALKKVIETMDNNL-IIYVVLQIKQQMAIA 584


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 10  PYDLPSENRKQDKLPLDMDGHVRYEGEMTHYVA 108
           PY LP  +   DKL    D  +  + E+T YV+
Sbjct: 168 PYQLPEMDVSFDKLGSSYDPRIMSQDELTQYVS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,436
Number of Sequences: 5004
Number of extensions: 37848
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)