Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533     28   4.0  
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163...    28   5.2  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    28   5.2  

>04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533
          Length = 295

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 168 CFW*FQRITFQHTFRKAIQTDFGSSDRSN 254
           CFW +  +T       A+ T FG++D SN
Sbjct: 34  CFWVYMHMTDAKELWDALNTKFGATDASN 62


>12_02_0874 +
           23915303-23915543,23915630-23915713,23915797-23916312,
           23916426-23916482,23916630-23916802,23916886-23917014,
           23917102-23917296,23917381-23917503,23918171-23918284
          Length = 543

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 212 PEGVLERDALELPKTGVSPFLATGLD 135
           P+G+  RD  +LP  G SP+   G+D
Sbjct: 297 PQGITCRDKKKLPAPGSSPYTPIGVD 322


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 310  LIEQFFELHVQDHVIL*CLFDLSEEPKSVCIAF-LKVCWNV 191
            L+EQFFE  + +HV++       +EPK +  A  + +CW V
Sbjct: 1190 LVEQFFEYLLNNHVVV-------QEPKYIFHALNIALCWRV 1223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,261,161
Number of Sequences: 37544
Number of extensions: 213090
Number of successful extensions: 302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)