Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125451-4|AAD12823.1|  157|Caenorhabditis elegans Hypothetical ...    58   5e-09
Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>AF125451-4|AAD12823.1|  157|Caenorhabditis elegans Hypothetical
           protein Y37E11B.3 protein.
          Length = 157

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 34/95 (35%), Positives = 46/95 (48%)
 Frame = +1

Query: 235 APQIGQIDITVLHDLEHEAQKIAQSVDXXXXXXXXXXXXXXXXTAENMDVYKDAVGKTCD 414
           A   G  D  +L DLE   ++I  ++D                T E++  Y   V K CD
Sbjct: 46  AAAAGLPDPKILVDLETHTKEIVNNMDTMLRDMRGSLHGMSDLTLESLQCYNSGVEKACD 105

Query: 415 AMDNNIKSMYTILAKGEEVSQAMIPVQAQATRIAE 519
             D N+KS Y +LAK EEV+Q+M  VQ  A +I E
Sbjct: 106 EADANVKSTYAMLAKVEEVNQSMGNVQKLAGQIKE 140


>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 519 LCYPCCLSLYRDHSL*HFFTFCKYCIHTLDVIVHCIASLTYCILINIH 376
           +C  CC+S +  H L HF       I +  ++ H    L+    +++H
Sbjct: 125 VCLECCVSSHNGHKLNHFSPASSPSIESSPIVHHRARQLSTSSTVSVH 172


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 465 FTFCKYCIHTLDVIVHCIASLTYCI 391
           F   ++C +TL+V+ HC+    +CI
Sbjct: 333 FQLYRHCSNTLEVLNHCLNFYVFCI 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.132    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,047
Number of Sequences: 27780
Number of extensions: 213549
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)