Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B04f
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.37 
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.1  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    26   2.6  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   4.5  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   6.0  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   6.0  

>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 357 FCSFVSSS*IHSVYFGITAFSEIISTVSMWLKEKKSSNVTPTKSSGFHRRVWVSP 193
           FC FVS S   +V FGI+ FS  +S    + +  K   V        HR+ +VSP
Sbjct: 3   FCFFVSLSFWFAVLFGISFFSSTLSNPLTYSRSYK--RVLARWGIRVHRQRFVSP 55


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 160 GYTSGVRDKFDLASTPSLSYTMTLCFCPCLLSGDPW 53
           GYTS + +KFD +  P  S+  T+ +   +    PW
Sbjct: 205 GYTSLMTEKFDSSFYPEYSHRRTIGWIDGISERSPW 240


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 324 SVYFGITAFSEIISTVSMWLKEKKSSNVTPTKSSGFHR 211
           S+ F ++    +I  + +W K    SNV    SS F R
Sbjct: 190 SICFSVSVVVSLIGLLGVWQKLLPKSNVYSVSSSSFAR 227


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 321 VYFGITAFSEIISTVSMWLKEKK 253
           +Y GI + S +I  VSMW   +K
Sbjct: 707 IYIGIVSSSIVILAVSMWYLRRK 729


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 136 CLLHLMCTPTYEHA 177
           C++HL+CT  YE A
Sbjct: 246 CMIHLLCTIEYEKA 259


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 200 FPPLICQVACSYVGVHIRCKRQIRPRVNTIPFLHHDAVL 84
           F P++ Q    Y+ V +       P  N I F H D+VL
Sbjct: 404 FAPVVFQKFQEYMAVRLLNPNFELPESNGIEFAHEDSVL 442


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 270 WLKEKKSSNVTPTKSSGFHRR 208
           WL+EK   N+TP  S GFH R
Sbjct: 288 WLEEKVYINLTP--SRGFHLR 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,952
Number of Sequences: 5004
Number of extensions: 48726
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)