Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B04f
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0370 - 2835071-2835285,2835427-2836045                           29   2.0  
02_01_0048 + 343154-343580,343956-344827,345830-346519                 28   3.4  
08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925     27   6.0  
03_01_0383 + 2980693-2980816,2980908-2981226,2981315-2981624           27   6.0  
07_03_0275 - 16160467-16160555,16160695-16160764,16160860-161609...    24   6.8  
03_01_0190 - 1508948-1509622,1510783-1511054,1511152-1511305           27   7.9  

>12_01_0370 - 2835071-2835285,2835427-2836045
          Length = 277

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  SGRPWVTR**TWTKAQRHGVRKGW 115
           SG+PW  R   WT +Q + + KGW
Sbjct: 82  SGKPWRFRYSYWTSSQSYVLTKGW 105


>02_01_0048 + 343154-343580,343956-344827,345830-346519
          Length = 662

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
 Frame = +2

Query: 80  TKAQRHGVRKGWC*REVEFVSYT*CVPPHT--NMLPGK*VGETQTLRWNPEDFVGVTL-- 247
           T ++R  V KGW    ++ +  T  +   T  N+L    V E +TLR N  DF G+T+  
Sbjct: 418 TDSERADVAKGWA--SLQSIPRTVELDTKTGSNLLQWP-VEEVETLRTNSTDFGGITVDY 474

Query: 248 LDFFSFN-HIDT-VDIISEKAVIPKYTEWIYDDD 343
              F  N H  T +DI++E  + P   + + + D
Sbjct: 475 ASVFPLNLHRATQLDILAEFQLDPLAVDAVLEAD 508


>08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925
          Length = 266

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 LTPDVYPHIRTCYLANEWGKPKPSDGTQRIL 233
           L P+  P +R  +L  +WG  +P D ++ I+
Sbjct: 111 LWPEGNPEVRARFLMGDWGGVRPGDCSETIV 141


>03_01_0383 + 2980693-2980816,2980908-2981226,2981315-2981624
          Length = 250

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 70  VNMDKSTASWCKKGMVLTRGRICLLHLMCTPTYEHATWQMSGGNPNPPME 219
           +  D+S + WCK G  +T   I   +L C P Y   +    GG  NPP +
Sbjct: 79  ITCDQSNSKWCKAGTSVT---ITATNL-CPPDYSKPS--NDGGWCNPPRQ 122


>07_03_0275 -
           16160467-16160555,16160695-16160764,16160860-16160940,
           16161160-16161252,16161430-16161510,16161605-16161694,
           16161812-16161905,16162063-16162131,16162205-16162275,
           16162545-16162628,16162755-16162847,16162995-16163102,
           16163297-16163447,16164026-16164297,16165213-16165218,
           16165389-16165613
          Length = 558

 Score = 24.2 bits (50), Expect(2) = 6.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 210 RVWVSPTHLP 181
           R+WVSPT LP
Sbjct: 52  RIWVSPTRLP 61



 Score = 21.4 bits (43), Expect(2) = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 213 RRVWVSPTHL 184
           R++WVSPT L
Sbjct: 3   RKIWVSPTML 12


>03_01_0190 - 1508948-1509622,1510783-1511054,1511152-1511305
          Length = 366

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 25  RLELAGLWKTMGHPIVNMDKSTASWCKKGMVLTRGR 132
           R  +AG WK  G      DKS     +K +V  +GR
Sbjct: 82  RATMAGFWKATGRDKAVHDKSRLIGMRKTLVFYKGR 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,835
Number of Sequences: 37544
Number of extensions: 328443
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)