Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B04f
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z82264-10|CAB54196.1|  384|Caenorhabditis elegans Hypothetical p...    28   3.1  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   4.1  
AC084197-42|AAU87806.2|  544|Caenorhabditis elegans Acetylcholin...    28   4.1  
U29380-5|AAA68737.1|  151|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    27   7.1  
AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    27   7.1  
Z74042-3|CAA98529.2|  523|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical
           protein R09A8.3 protein.
          Length = 817

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 373 FXFQNLPHDKEASVMHYLT--TEIFYFKXDHL 462
           F FQN+PHD+    +  LT  T I Y + +HL
Sbjct: 310 FYFQNMPHDRAEHSIDLLTCKTHILYMEENHL 341


>Z82264-10|CAB54196.1|  384|Caenorhabditis elegans Hypothetical
           protein C49C3.10 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 480 TPMSMREMIXFKIKNFGRQ 424
           +P+ MRE I  KIKNFG Q
Sbjct: 357 SPLDMREEIFQKIKNFGNQ 375


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 168  VCGGTHQV*ETNSTSRQHH 112
            + GGTHQ   T  TSR HH
Sbjct: 1042 ISGGTHQTTHTAPTSRTHH 1060


>AC084197-42|AAU87806.2|  544|Caenorhabditis elegans Acetylcholine
           receptor protein 25 protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 206 TLRWNPEDFVGVTLLDFFSFNHIDTVDIISEKAVIPKY 319
           +L+W PED+ GVT L F     + T D++   +  P++
Sbjct: 86  SLKWKPEDYGGVTDLRFRK-GQLWTPDVLMYNSADPQF 122


>U29380-5|AAA68737.1|  151|Caenorhabditis elegans Hypothetical
           protein ZK546.4 protein.
          Length = 151

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 331 DPLCVFWNYCFFRNNINSIDVVERKKI 251
           D +  FWNY  F    NS    ER+KI
Sbjct: 36  DKISDFWNYLAFSRPTNSAPTSEREKI 62


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 207 VWVSPTHLPGSMFVCGGTHQV*ETNSTSRQHHPF 106
           +W S T+LP     CGG H++ + N +      F
Sbjct: 512 IWNSTTNLPIFETYCGGGHRIWQLNGSEENKFNF 545


>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +2

Query: 194 GETQTLRWNPEDFVGVTLLDFFS-FNHIDTVDIISEKAVIPKYTEWIYDDDTKLQNITRK 370
           GE    RWNP   V   LL   S  N  +T    +  A +  Y +W  D D +   I  K
Sbjct: 108 GELACERWNPTQSVRTILLSVISLLNEPNTSSPANVDASV-MYRKWKEDQDPEYAKIVTK 166


>Z74042-3|CAA98529.2|  523|Caenorhabditis elegans Hypothetical
           protein T11F9.4 protein.
          Length = 523

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 215 WNPEDFVGVTLLDFFSFNHIDTVDIISEKAVIPKYT 322
           WNP  FV       FS++  D ++  +E+   PK T
Sbjct: 210 WNPGPFVNALFAGLFSYDGWDILNFGAEEIENPKRT 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,052
Number of Sequences: 27780
Number of extensions: 281249
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)