Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B04f
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.18 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.42 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.3  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   5.2  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 209 LRWNPEDFVGVTLLDFFSFNHIDTVDII 292
           L+WNP+D+ GV  L   S  HI   DI+
Sbjct: 82  LKWNPDDYGGVDTLHVPS-EHIWLPDIV 108


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.0 bits (52), Expect = 0.42
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 209 LRWNPEDFVGVTLL 250
           L+WNPE++ GV +L
Sbjct: 95  LKWNPEEYGGVEML 108


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 209 LRWNPEDFVGVTLLDFFSFNHIDTVDIISEKAVIPKYT 322
           L+WN  +F G+ ++    +N +   D I      P+Y+
Sbjct: 67  LKWNASEFAGIRVIR-VPYNRVWRPDTILYNNADPQYS 103


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 221 PEDFVGVTLLDFFSFNHIDTVDIISEKAVIPKYTEWIYDDDTKLQNITRKSXPFR 385
           P+D VG +L DF+   H + +  I +          IY+   KL+  + +S P+R
Sbjct: 335 PQDMVGRSLFDFY---HPEDLPFIKD----------IYETVIKLEGASFRSKPYR 376


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 221 PEDFVGVTLLDFFSFNHIDTVDIISEKAVIPKYTEWIYDDDTKLQNITRKSXPFR 385
           P+D VG +L DF+   H + +  I +          IY+   KL+  + +S P+R
Sbjct: 41  PQDMVGRSLFDFY---HPEDLPFIKD----------IYETVIKLEGASFRSKPYR 82


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 417 HYXRFFVVGEIL 382
           HY +FF V EIL
Sbjct: 55  HYSKFFPVSEIL 66


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 379 FQNLPHDKEASVMHYLT 429
           FQ L  +KE    HYLT
Sbjct: 18  FQTLELEKEFHYNHYLT 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,707
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)