Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B02f
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   105   3e-24
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   8.3  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  105 bits (253), Expect = 3e-24
 Identities = 58/121 (47%), Positives = 75/121 (61%)
 Frame = -3

Query: 455 MGPPIFLGXEHYKXARGVQXILQXYKXXRGXLLLIFGYGRVV*RRTS*QWHXARKIQXFL 276
           M  P  LG EHY  A  VQ +LQ YK  +  ++ I G   +           ARK+Q FL
Sbjct: 403 MMDPRILGEEHYNLAGSVQQMLQEYKSLQD-IIAILGMDELS-EADKLTVERARKVQRFL 460

Query: 275 SQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLA 96
           SQPF VAEVFTG  G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KA+ +A
Sbjct: 461 SQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIA 520

Query: 95  K 93
           +
Sbjct: 521 Q 521


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 190 LENPLIVSSSGTSLPACPVNTSATWKG 270
           L  PLI   +G   PA PVN  A W G
Sbjct: 673 LNGPLIFGGTGYIPPATPVNYLA-WSG 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,443
Number of Sequences: 5004
Number of extensions: 32068
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)