Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B02f
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0746 + 5554686-5556179                                           28   3.6  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    28   4.7  
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437...    28   4.7  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    27   8.3  
02_05_0669 - 30755406-30756081,30756869-30756933,30757040-307572...    27   8.3  

>02_01_0746 + 5554686-5556179
          Length = 497

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 296 VHXATVNLSFFRQLVHTQK*AIXVPAGTCXPEEXSELPVXLCSAXLP 436
           +H  TV+ S  R LV     ++  P  T       ELPV LC +  P
Sbjct: 432 LHGVTVSRSPLRGLVGLHGSSLMTPPPTDSGRRSPELPVLLCKSVFP 478


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 203 KGFSKILAGD--YDHLPEVAFYMVGPIEEVVAK 111
           KG  +++AG   + H     FYM+ P EEVV K
Sbjct: 163 KGTERLVAGAQLFGHSTRQPFYMIQPSEEVVQK 195


>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
            31343927-31344122,31344419-31344602,31344984-31345147,
            31345454-31345981,31346530-31346630,31347619-31347634,
            31347834-31347941,31348028-31348078,31349059-31349100,
            31349442-31349541,31350039-31350256,31350367-31350807,
            31350916-31351043,31351131-31351992
          Length = 1288

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 120  NLLNRSNHVECYFWQMIIVPC*NFGESFDSFLKWY*FTRMSSEHL 254
            N +NR NH++ +FW + ++   NF  ++  +  WY +    S H+
Sbjct: 1240 NNINR-NHLDLFFWLLAVLSFLNF-LNYLFWASWYKYKPQQSAHV 1282


>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
            571635-571885,572018-572128,572209-572320,572626-572716,
            573168-573507,573678-573900,573946-574204,574274-574481,
            574572-574622,574712-574870,574956-575120,575322-575399,
            575732-576031,576107-576259,576871-576918,577019-577188,
            577738-577852,578462-578623,578789-578893,578969-579199,
            579277-579410,579484-579738,579822-580110,580214-580306,
            580395-580520,580646-580897
          Length = 1693

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 199  PLIVSSSGTSLPACPVNTSATWKGCERNX*ILRAXCHCQLVLLQTTRPYPKISNNXPR 372
            PL +S++ TSLP+CP + +  ++  +              V  Q  RP P+ S+   R
Sbjct: 1588 PLNISNTNTSLPSCPQDAARVYQDFKTVLREDTVDYGMYTVSAQKKRPTPRSSSRVRR 1645


>02_05_0669 -
           30755406-30756081,30756869-30756933,30757040-30757209,
           30757313-30757496,30758536-30758619,30758740-30758938,
           30760200-30760441,30761811-30762053
          Length = 620

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 243 SEHLSYLERL*EEPLNFTCTVPLSTCPSSDNSSIPK 350
           SE   +L+RL ++    TC +P   C S D   IP+
Sbjct: 196 SEIKEHLDRLGDQLFTGTCAMPPLHCRSKDKFKIPE 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,305,277
Number of Sequences: 37544
Number of extensions: 196659
Number of successful extensions: 365
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)